Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARID2_chr12_45724706_45913037	0/0	t0005	3091	4	4	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0006	3092	4	4	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0007	3091	3	3	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0008	3091	3	3	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0009	3091	3	1	2	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0010	3091	2	0	0	2	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0011	3091	2	2	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0012	3091	2	0	1	0	0	1	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0013	3091	2	0	1	0	0	1	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0014	3091	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0015	3091	1	0	0	1	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0016	3091	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0017	3091	1	0	0	0	0	1	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0018	3092	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0019	3079	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0020	3092	1	0	0	0	0	1	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0021	3092	1	1	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID3A_chr19_921035_980939	0/0	t0001	4174	15	0	4	11	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0002	4174	11	1	2	7	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0003	4181	8	0	1	5	1	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0004	4180	7	1	1	4	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0005	4181	6	0	2	1	0	3	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0006	4175	5	0	5	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0007	4173	5	0	1	4	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/1	t0008	4182	5	1	1	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0009	4182	5	0	3	1	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0010	4175	4	0	1	3	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0011	4174	4	0	0	4	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0012	4182	4	0	0	4	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0013	4183	4	0	1	1	0	2	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0014	4180	4	0	0	3	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0015	4167	3	0	2	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0016	4165	3	2	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0017	4175	3	0	0	3	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0018	4174	3	0	0	3	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0019	4181	3	0	1	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0020	4183	3	0	0	2	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0021	4176	3	0	0	1	0	2	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0022	4168	2	0	2	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	1/0	t0023	4167	2	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0024	4166	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0025	4172	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0026	4176	2	0	2	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0027	4168	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0028	4172	2	0	0	0	2	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0029	4173	2	0	0	0	0	2	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0030	4175	2	0	0	1	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0031	4175	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0032	4173	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0033	4187	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939