JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTO1_chr6_73456737_73514236	0/0	t0128	9301	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTOR_chr1_11101535_11267551	1/1	t0001	1072	126	68	16	27	3	10	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0002	1072	82	9	19	36	3	15	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0003	1072	37	7	9	11	2	8	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0004	1070	3	3	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0005	1072	2	1	0	0	0	1	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0006	1072	1	0	1	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0007	1072	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0008	1072	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0009	1072	1	0	0	1	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0010	1072	1	0	1	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTOR_chr1_11101535_11267551	0/0	t0011	1070	1	1	0	0	0	0	copy fasta	MTOR	chr1	11101535	11267551
MTPAP_chr10_30304801_30354278	1/1	t0001	3812	80	3	9	53	5	8	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0002	3810	77	1	8	60	1	7	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0003	3810	49	4	18	12	5	10	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0004	3807	28	0	9	10	4	5	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0005	3811	19	17	2	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0006	3803	15	13	2	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0007	3811	15	12	3	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0008	3813	9	4	3	2	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0009	3811	6	1	1	2	0	2	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0010	3810	4	4	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0011	3811	4	4	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0012	3810	3	0	0	0	2	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0013	3810	3	0	0	3	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0014	3809	3	1	0	2	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0015	3810	3	3	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0016	3811	3	0	0	2	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0017	3811	3	0	0	2	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0018	3809	2	2	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0019	3809	2	2	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0020	3809	2	0	2	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0021	3809	2	2	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0022	3810	2	2	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0023	3812	2	2	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0024	3810	1	0	0	0	1	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0025	3811	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0026	3803	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0027	3803	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0028	3810	1	0	1	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0029	3810	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0030	3809	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0031	3809	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0032	3810	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0033	3809	1	0	1	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0034	3810	1	0	1	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0035	3811	1	0	0	0	0	1	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0036	3809	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0037	3810	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0038	3811	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278