JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTPAP_chr10_30304801_30354278	0/0	t0039	3812	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0040	3812	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0041	3811	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0042	3812	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0043	3814	1	0	0	1	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0044	3813	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPAP_chr10_30304801_30354278	0/0	t0045	3812	1	1	0	0	0	0	copy fasta	MTPAP	chr10	30304801	30354278
MTPN_chr7_135921760_135982359	1/1	t0001	3426	272	49	41	131	12	37	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0002	3426	29	0	1	27	0	1	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0003	3427	28	1	3	21	1	2	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0004	3426	9	9	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0005	3426	6	5	1	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0006	3426	5	1	4	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0007	3426	5	4	0	0	1	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0008	3426	3	0	3	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0009	3426	3	2	1	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0010	3426	3	3	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0011	3426	2	0	0	2	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0012	3426	2	0	0	2	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0013	3426	2	2	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0014	3426	2	0	0	2	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0015	3426	1	0	0	1	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0016	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0017	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0018	3426	1	0	0	1	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0019	3426	1	0	0	1	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0020	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0021	3400	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0022	3426	1	0	0	1	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0023	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0024	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0025	3426	1	0	1	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0026	3416	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0027	3414	1	0	0	1	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0028	3426	1	0	1	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTPN_chr7_135921760_135982359	0/0	t0029	3426	1	1	0	0	0	0	copy fasta	MTPN	chr7	135921760	135982359
MTRES1_chr6_107023199_107056586	0/1	t0001	433	374	68	81	166	17	41	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0002	436	21	15	5	0	1	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0003	436	3	3	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	1/0	t0004	436	2	1	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0005	433	2	2	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0006	433	2	2	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0007	433	1	0	0	0	0	1	copy fasta	MTRES1	chr6	107023199	107056586
MTRES1_chr6_107023199_107056586	0/0	t0008	433	1	1	0	0	0	0	copy fasta	MTRES1	chr6	107023199	107056586
MTREX_chr5_55302989_55430579	0/0	t0001	833	184	56	20	86	5	17	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	1/1	t0002	833	122	24	27	51	7	11	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	t0003	833	11	0	0	11	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	t0004	833	2	0	0	2	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTREX_chr5_55302989_55430579	0/0	t0005	833	1	0	1	0	0	0	copy fasta	MTREX	chr5	55302989	55430579
MTRF1L_chr6_152982362_153007709	1/0	t0001	2558	118	1	22	77	5	12	copy fasta	MTRF1L	chr6	152982362	153007709