JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTRF1L_chr6_152982362_153007709	0/0	t0002	2559	112	14	23	60	1	14	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0003	2560	48	15	2	22	2	7	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0004	2559	46	9	12	19	4	2	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0005	2558	28	5	13	6	1	3	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0006	2559	20	10	0	10	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0007	2559	16	6	1	4	0	5	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0008	2560	12	7	0	5	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0009	2559	9	9	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0010	2557	9	1	3	3	1	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0011	2558	5	0	1	4	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0012	2560	4	1	1	2	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0013	2558	4	4	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0014	2559	3	3	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0015	2559	3	3	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0016	2557	2	0	1	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0017	2559	2	0	0	2	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0018	2559	2	0	0	0	0	2	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0019	2559	2	0	0	0	1	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0020	2559	2	0	0	1	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0021	2559	2	2	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0022	2558	2	0	0	2	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0023	2560	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0024	2560	1	0	0	0	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0025	2560	1	0	0	0	1	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0026	2558	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0027	2558	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0028	2559	1	0	1	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0029	2560	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0030	2559	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0031	2560	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0032	2560	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0033	2558	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0034	2558	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0035	2558	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0036	2558	1	0	0	1	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0037	2560	1	1	0	0	0	0	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1L_chr6_152982362_153007709	0/0	t0038	2558	1	0	0	0	0	1	copy fasta	MTRF1L	chr6	152982362	153007709
MTRF1_chr13_41211369_41268576	1/1	t0001	847	293	70	51	137	9	24	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	t0002	847	21	0	0	21	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	t0003	847	10	10	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	t0004	847	6	4	1	0	1	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	t0005	847	1	1	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRF1_chr13_41211369_41268576	0/0	t0006	847	1	1	0	0	0	0	copy fasta	MTRF1	chr13	41211369	41268576
MTRFR_chr12_123228436_123262960	0/0	t0001	1054	121	3	41	49	12	16	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	1/1	t0002	1054	99	71	17	0	3	6	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0003	1047	53	2	4	42	0	5	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0004	1054	21	1	4	8	1	7	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0005	1054	2	0	0	0	0	2	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0006	1047	1	0	1	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0007	1054	1	0	0	0	0	1	copy fasta	MTRFR	chr12	123228436	123262960