JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTRFR_chr12_123228436_123262960	0/0	t0008	1054	1	0	0	1	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0009	1054	1	0	0	1	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0010	1054	1	0	0	1	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0011	1054	1	1	0	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0012	1054	1	0	0	0	0	1	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0013	1037	1	1	0	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0014	1054	1	0	1	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRFR_chr12_123228436_123262960	0/0	t0015	1054	1	1	0	0	0	0	copy fasta	MTRFR	chr12	123228436	123262960
MTRR_chr5_7864148_7906113	1/1	t0001	1149	150	8	22	105	1	12	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0002	1148	131	18	22	66	6	19	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0003	1149	90	37	19	28	2	4	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0004	1148	22	8	6	0	5	3	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0005	1148	16	15	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0006	1149	4	0	0	4	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0007	1148	3	0	0	0	0	3	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0008	1149	2	1	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0009	1148	2	2	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0010	1149	2	0	1	0	0	1	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0011	1148	1	1	0	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0012	1149	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0013	1148	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0014	1149	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0015	1149	1	0	0	1	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTRR_chr5_7864148_7906113	0/0	t0016	1149	1	0	1	0	0	0	copy fasta	MTRR	chr5	7864148	7906113
MTR_chr1_236790292_236908981	0/0	t0001	6750	89	6	21	52	2	8	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/1	t0002	6748	45	1	12	20	4	7	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0003	6749	37	1	10	16	2	8	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0004	6751	37	13	2	22	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0005	6750	18	4	1	9	0	4	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0006	6754	16	3	1	9	1	2	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0007	6749	8	7	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0008	6751	7	0	0	5	1	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0009	6750	6	6	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0010	6749	5	5	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0011	6754	4	4	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0012	6748	4	0	0	4	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0013	6750	4	0	0	0	1	3	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0014	6734	3	3	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0015	6749	3	2	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0016	6749	3	0	1	0	2	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0017	6748	3	0	3	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0018	6748	3	0	3	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0019	6748	3	1	0	1	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0020	6750	3	3	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0021	6750	3	0	0	3	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0022	6749	2	1	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0023	6748	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0024	6752	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0025	6752	2	0	2	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0026	6745	2	1	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981