JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTR_chr1_236790292_236908981	0/0	t0027	6745	2	2	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0028	6751	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0029	6750	2	0	0	2	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0030	6750	2	1	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0031	6745	2	2	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0032	6752	2	2	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0033	6748	2	0	1	0	1	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0034	6750	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0035	6750	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0036	6751	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0037	6750	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0038	6750	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0039	6749	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0040	6749	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0041	6749	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0042	6751	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0043	6751	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0044	6755	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0045	6751	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0046	6748	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0047	6748	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0048	6752	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	1/0	t0049	6750	1	0	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0050	6751	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0051	6751	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0052	6736	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0053	6750	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0054	6745	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0055	6750	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0056	6736	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0057	6750	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0058	6750	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0059	6751	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0060	6750	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0061	6750	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0062	6750	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0063	6751	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0064	6750	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0065	6745	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0066	6752	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0067	6752	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0068	6751	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0069	6751	1	0	1	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0070	6754	1	0	0	0	0	1	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0071	6751	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0072	6755	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0073	6749	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0074	6755	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0075	6755	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTR_chr1_236790292_236908981	0/0	t0076	6754	1	1	0	0	0	0	copy fasta	MTR	chr1	236790292	236908981