JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTR_chr1_236790292_236908981	0/0	t0077	6750	1	0	0	1	0	0	copy fasta	MTR	chr1	236790292	236908981
MTSS1_chr8_124545784_124733473	1/1	t0001	2727	164	57	26	61	6	12	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0002	2726	44	12	3	16	1	12	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0003	2726	31	9	4	14	0	4	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0004	2727	16	1	5	9	1	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0005	2727	8	1	2	0	2	3	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0006	2727	4	4	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0007	2726	4	3	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0008	2726	2	0	0	2	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0009	2727	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0010	2727	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0011	2727	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0012	2727	1	0	0	1	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0013	2727	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0014	2726	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0015	2727	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0016	2727	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0017	2727	1	0	0	1	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0018	2727	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0019	2726	1	0	1	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0020	2707	1	1	0	0	0	0	copy fasta	MTSS1	chr8	124545784	124733473
MTSS1_chr8_124545784_124733473	0/0	t0021	2727	1	0	0	0	0	1	copy fasta	MTSS1	chr8	124545784	124733473
MTSS2_chr16_70656204_70691053	1/0	t0001	2736	44	2	10	28	0	3	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0002	2732	20	0	1	18	1	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0003	2737	15	1	3	7	2	2	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0004	2736	13	2	3	6	0	2	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0005	2733	12	1	1	7	2	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0006	2732	12	0	6	6	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0007	2736	12	0	3	4	2	3	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0008	2736	8	2	6	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0009	2736	8	8	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0010	2737	8	0	1	7	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0011	2732	8	1	3	2	1	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0012	2736	7	7	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0013	2737	5	0	1	2	0	2	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0014	2733	5	0	3	0	1	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0015	2733	5	0	1	2	2	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0016	2735	5	5	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0017	2736	5	0	1	4	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0018	2733	4	0	4	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0019	2736	4	0	2	2	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0020	2732	4	0	1	3	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0021	2737	4	2	0	1	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0022	2734	3	0	3	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0023	2734	3	0	0	0	0	3	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0024	2734	3	0	0	1	0	2	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0025	2737	3	0	0	3	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0026	2737	3	0	0	2	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0027	2736	3	3	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0028	2736	3	3	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053