JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTSS2_chr16_70656204_70691053	0/0	t0079	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0080	2737	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0081	2739	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0082	2738	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0083	2738	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0084	2737	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0085	2737	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0086	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0087	2732	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0088	2733	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0089	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0090	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0091	2737	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0092	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0093	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0094	2737	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0095	2737	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0096	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0097	2737	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0098	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0099	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0100	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0101	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0102	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0103	2737	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0104	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0105	2732	1	0	0	0	1	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0106	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0107	2732	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0108	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0109	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0110	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0111	2747	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0112	2737	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0113	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0114	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0115	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0116	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0117	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0118	2732	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0119	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0120	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0121	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0122	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0123	2736	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0124	2731	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0125	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0126	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0127	2735	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0128	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053