JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTSS2_chr16_70656204_70691053	0/0	t0129	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0130	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0131	2731	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0132	2735	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0133	2732	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0134	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0135	2734	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0136	2732	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0137	2734	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0138	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0139	2733	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0140	2736	1	0	0	0	0	1	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0141	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0142	2732	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0143	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0144	2737	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0145	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0146	2735	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0147	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0148	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0149	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0150	2731	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0151	2733	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0152	2732	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0153	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0154	2736	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0155	2733	1	0	0	0	1	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/1	t0156	2733	1	0	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0157	2733	1	0	1	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0158	2737	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0159	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0160	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0161	2731	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0162	2732	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0163	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0164	2736	1	0	0	1	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTSS2_chr16_70656204_70691053	0/0	t0165	2736	1	1	0	0	0	0	copy fasta	MTSS2	chr16	70656204	70691053
MTTP_chr4_99569824_99628997	0/0	t0001	1236	242	71	21	135	0	15	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	1/1	t0002	1236	77	3	21	32	6	13	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0003	1233	13	8	5	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0004	1234	10	0	3	1	0	6	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0005	1234	4	2	2	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0006	1237	3	0	3	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0007	1233	3	3	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0008	1236	2	0	0	2	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0009	1237	2	0	0	2	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0010	1236	2	2	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0011	1236	2	1	1	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0012	1237	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0013	1236	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997