JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTTP_chr4_99569824_99628997	0/0	t0014	1236	1	1	0	0	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTTP_chr4_99569824_99628997	0/0	t0015	1236	1	0	0	1	0	0	copy fasta	MTTP	chr4	99569824	99628997
MTURN_chr7_30129986_30167762	0/0	t0001	5366	122	6	25	76	5	10	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	1/1	t0002	5366	87	11	24	42	3	5	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0003	5367	53	5	6	31	2	9	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0004	5366	19	4	10	0	0	5	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0005	5361	14	12	2	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0006	5366	7	0	0	7	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0007	5365	7	5	2	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0008	5367	7	1	0	5	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0009	5366	7	3	0	4	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0010	5366	6	6	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0011	5366	5	0	2	1	2	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0012	5366	5	0	0	5	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0013	5366	5	3	2	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0014	5366	5	0	0	5	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0015	5367	4	4	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0016	5365	4	0	0	4	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0017	5365	3	3	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0018	5366	3	3	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0019	5367	3	3	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0020	5361	3	3	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0021	5366	3	3	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0022	5366	2	2	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0023	5366	2	0	1	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0024	5366	2	2	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0025	5366	2	2	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0026	5366	2	0	0	0	0	2	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0027	5367	2	0	0	0	1	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0028	5366	2	2	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0029	5366	2	1	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0030	5366	2	2	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0031	5366	1	0	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0032	5368	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0033	5367	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0034	5367	1	0	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0035	5367	1	0	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0036	5367	1	0	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0037	5368	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0038	5367	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0039	5361	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0040	5366	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0041	5366	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0042	5366	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0043	5367	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0044	5366	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0045	5367	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0046	5366	1	0	1	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0047	5364	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0048	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762