Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABLIM1_chr10_114426112_114663275	0/0	t0150	5223	1	0	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0151	5230	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0152	5228	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0153	5232	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0154	5221	1	0	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0155	5219	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0156	5221	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0157	5220	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0158	5215	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0159	5216	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0160	5219	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0161	5222	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM2_chr4_7960327_8163813	0/1	t0001	1788	114	7	21	61	6	18	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0002	1788	60	29	20	1	4	6	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0003	1788	47	5	1	35	0	6	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0004	1788	15	7	1	2	0	5	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0005	1788	14	4	9	1	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0006	1777	14	5	3	2	2	2	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0007	1786	9	9	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	1/0	t0008	1788	6	0	2	0	2	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0009	1788	5	5	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0010	1788	5	5	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0011	1788	4	0	0	4	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0012	1788	2	2	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0013	1788	2	0	2	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0014	1788	2	2	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0015	1788	2	0	2	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0016	1788	2	2	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0017	1788	2	2	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0018	1788	1	0	1	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0019	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0020	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0021	1788	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0022	1788	1	0	0	1	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0023	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0024	1788	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0025	1788	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0026	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0027	1788	1	0	1	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0028	1777	1	0	1	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0029	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0030	1788	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0031	1788	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0032	1788	1	0	0	1	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0033	1777	1	0	0	0	0	1	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM2_chr4_7960327_8163813	0/0	t0034	1788	1	1	0	0	0	0	copy fasta	ABLIM2	chr4	7960327	8163813
ABLIM3_chr5_149136493_149265542	1/0	t0001	2388	113	15	22	58	6	11	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/1	t0002	2388	78	7	13	45	4	8	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0003	2388	19	16	2	0	0	1	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0004	2388	16	13	1	0	0	2	copy fasta	ABLIM3	chr5	149136493	149265542