Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARID3A_chr19_921035_980939	0/0	t0034	4187	2	1	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0035	4183	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0036	4182	2	0	1	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0037	4185	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0038	4174	2	1	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0039	4181	2	0	0	1	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0040	4181	2	0	1	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0041	4177	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0042	4171	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0043	4171	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0044	4182	2	2	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0045	4184	2	0	0	2	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0046	4186	2	0	1	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0047	4184	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0048	4184	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0049	4169	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0050	4168	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0051	4167	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0052	4168	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0053	4168	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0054	4166	1	0	0	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0055	4167	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0056	4166	1	0	0	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0057	4166	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0058	4166	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0059	4160	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0060	4174	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0061	4165	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0062	4164	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0063	4169	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0064	4173	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0065	4173	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0066	4175	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0067	4175	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0068	4173	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0069	4175	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0070	4175	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0071	4175	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0072	4175	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0073	4174	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0074	4176	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0075	4177	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0076	4177	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0077	4176	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0078	4175	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0079	4168	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0080	4174	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0081	4175	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0082	4175	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0083	4168	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939