JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTURN_chr7_30129986_30167762	0/0	t0049	5364	1	0	0	0	1	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0050	5366	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0051	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0052	5366	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0053	5361	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0054	5365	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0055	5366	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0056	5365	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0057	5366	1	0	0	0	0	1	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0058	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0059	5369	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0060	5367	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0061	5367	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0062	5367	1	0	0	1	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0063	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0064	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0065	5365	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTURN_chr7_30129986_30167762	0/0	t0066	5366	1	1	0	0	0	0	copy fasta	MTURN	chr7	30129986	30167762
MTUS1_chr8_17638802_17806094	0/1	t0001	2309	82	10	20	38	6	7	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0002	2309	54	8	14	25	0	7	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0003	2309	28	1	5	18	1	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0004	2309	22	16	1	1	0	4	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0005	2311	18	5	0	10	0	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0006	2309	13	5	1	4	0	3	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0007	2309	10	9	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0008	2309	8	2	0	6	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0009	2309	8	1	3	0	3	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0010	2309	8	0	2	4	1	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0011	2313	7	2	2	1	0	2	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0012	2309	6	1	3	0	1	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0013	2309	5	5	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	1/0	t0014	2313	4	3	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0015	2298	4	4	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0016	2309	4	4	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0017	2309	3	3	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0018	2311	3	0	2	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0019	2307	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0020	2309	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0021	2307	2	0	2	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0022	2313	2	0	0	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0023	2309	2	2	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0024	2313	2	0	0	1	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0025	2309	2	0	0	2	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0026	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0027	2315	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0028	2317	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0029	2309	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0030	2307	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0031	2313	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0032	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094