JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTUS1_chr8_17638802_17806094	0/0	t0033	2305	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0034	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0035	2315	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0036	2313	1	0	0	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0037	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0038	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0039	2305	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0040	2307	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0041	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0042	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0043	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0044	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0045	2315	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0046	2313	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0047	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0048	2309	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0049	2313	1	1	0	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0050	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0051	2309	1	0	0	0	0	1	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0052	2309	1	0	1	0	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0053	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS1_chr8_17638802_17806094	0/0	t0054	2309	1	0	0	1	0	0	copy fasta	MTUS1	chr8	17638802	17806094
MTUS2_chr13_28815339_29510947	0/1	t0001	3329	19	10	3	2	3	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0002	3329	10	1	2	6	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0003	3329	10	7	3	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0004	3330	7	4	1	0	1	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0005	3329	4	0	0	1	1	2	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0006	3330	4	4	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0007	3329	3	0	0	2	1	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0008	3333	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0009	3334	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0010	3328	3	3	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0011	3329	2	2	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0012	3330	2	2	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0013	3330	2	2	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0014	3334	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0015	3330	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0016	3329	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0017	3330	1	0	0	1	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0018	3329	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	1/0	t0019	3330	1	0	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0020	3334	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0021	3329	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0022	3332	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0023	3333	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0024	3328	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0025	3331	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0026	3330	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0027	3330	1	0	1	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0028	3329	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947