JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTUS2_chr13_28815339_29510947	0/0	t0029	3329	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0030	3330	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0031	3329	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0032	3329	1	0	0	0	0	1	copy fasta	MTUS2	chr13	28815339	29510947
MTUS2_chr13_28815339_29510947	0/0	t0033	3329	1	1	0	0	0	0	copy fasta	MTUS2	chr13	28815339	29510947
MTX1_chr1_155203695_155218823	1/1	t0001	236	324	78	66	123	18	37	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	t0002	236	29	1	0	27	0	1	copy fasta	MTX1	chr1	155203695	155218823
MTX1_chr1_155203695_155218823	0/0	t0003	236	1	1	0	0	0	0	copy fasta	MTX1	chr1	155203695	155218823
MTX2_chr2_176264442_176343025	1/1	t0001	550	234	62	38	104	11	17	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0002	550	86	20	25	33	1	7	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0003	550	9	0	0	9	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0004	550	7	5	2	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0005	547	6	5	1	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0006	550	4	0	0	0	0	4	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0007	550	1	1	0	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX2_chr2_176264442_176343025	0/0	t0008	547	1	1	0	0	0	0	copy fasta	MTX2	chr2	176264442	176343025
MTX3_chr5_79971716_79996262	0/0	t0001	6993	110	32	20	38	5	15	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	1/1	t0002	6993	86	10	14	43	4	13	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0003	6993	68	3	20	35	0	10	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0004	6993	56	6	3	42	1	4	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0005	6993	28	0	0	28	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0006	6993	19	2	9	2	2	4	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0007	6993	11	1	0	10	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0008	6993	7	5	2	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0009	6993	6	6	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0010	6993	5	4	1	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0011	6993	3	3	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0012	6993	3	0	2	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0013	6995	3	0	2	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0014	6993	3	1	2	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0015	6993	3	3	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0016	6993	2	2	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0017	6993	2	2	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0018	6993	2	0	0	2	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0019	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0020	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0021	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0022	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0023	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0024	6993	1	0	0	0	0	1	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0025	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0026	6993	1	0	0	0	0	1	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0027	6976	1	0	1	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0028	6993	1	0	1	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0029	6995	1	0	0	0	1	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0030	6993	1	0	0	0	1	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0031	6993	1	0	0	0	0	1	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0032	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0033	6993	1	0	1	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0034	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262