JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTX3_chr5_79971716_79996262	0/0	t0035	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0036	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0037	6996	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0038	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0039	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0040	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0041	6990	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0042	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0043	6993	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0044	6996	1	0	0	1	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0045	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0046	6993	1	0	0	0	0	1	copy fasta	MTX3	chr5	79971716	79996262
MTX3_chr5_79971716_79996262	0/0	t0047	6993	1	1	0	0	0	0	copy fasta	MTX3	chr5	79971716	79996262
MUC12_chr7_100964565_101023936	0/1	t0001	359	339	90	74	117	14	43	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	t0002	359	1	0	0	0	0	1	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	0/0	t0003	359	1	0	0	1	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC12_chr7_100964565_101023936	1/0	t0004	359	1	0	0	0	0	0	copy fasta	MUC12	chr7	100964565	101023936
MUC13_chr3_124900442_124939751	0/0	t0001	1341	246	38	42	132	11	23	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	1/1	t0002	1341	107	26	22	46	5	6	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0003	1341	69	10	16	28	0	15	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0004	1341	13	10	3	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0005	1341	8	8	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0006	1341	2	0	0	0	0	2	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0007	1341	2	2	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0008	1341	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0009	1341	1	0	0	1	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0010	1341	1	0	1	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0011	1341	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC13_chr3_124900442_124939751	0/0	t0012	1341	1	1	0	0	0	0	copy fasta	MUC13	chr3	124900442	124939751
MUC15_chr11_26554032_26577263	1/0	t0001	2302	113	28	17	57	1	9	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0002	2304	70	6	26	27	2	9	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0003	2298	57	5	9	32	4	7	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/1	t0004	2300	57	9	10	33	1	3	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0005	2294	43	3	10	22	4	4	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0006	2304	29	15	3	5	1	5	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0007	2302	18	2	0	16	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0008	2298	14	7	1	6	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0009	2300	10	3	1	1	0	5	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0010	2294	8	0	0	8	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0011	2306	7	1	0	6	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0012	2292	6	4	0	2	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0013	2296	6	5	0	1	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0014	2308	6	3	1	2	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0015	2294	4	3	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0016	2298	2	0	0	0	2	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0017	2296	2	1	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0018	2304	2	0	0	2	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0019	2302	2	0	0	1	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0020	2302	2	2	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0021	2298	1	0	1	0	0	0	copy fasta	MUC15	chr11	26554032	26577263