JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MUC15_chr11_26554032_26577263	0/0	t0022	2300	1	0	0	1	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0023	2292	1	0	0	1	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0024	2300	1	1	0	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0025	2294	1	0	0	0	0	1	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0026	2304	1	0	1	0	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0027	2304	1	0	0	0	1	0	copy fasta	MUC15	chr11	26554032	26577263
MUC15_chr11_26554032_26577263	0/0	t0028	2304	1	0	0	1	0	0	copy fasta	MUC15	chr11	26554032	26577263
MUC17_chr7_101015081_101063859	0/0	t0001	871	128	24	26	57	3	18	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	1/1	t0002	871	110	26	28	44	2	8	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0003	871	54	1	1	37	0	15	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0004	871	47	37	7	0	2	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0005	871	11	2	0	8	0	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0006	871	10	1	6	0	2	1	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0007	871	2	0	0	0	2	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0008	871	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0009	871	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0010	871	1	0	0	0	1	0	copy fasta	MUC17	chr7	101015081	101063859
MUC17_chr7_101015081_101063859	0/0	t0011	871	1	1	0	0	0	0	copy fasta	MUC17	chr7	101015081	101063859
MUC20_chr3_195715978_195738551	0/1	t0001	364	82	8	11	55	1	6	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0002	364	67	21	20	17	1	8	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0003	31	28	1	1	25	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0004	31	3	0	2	0	0	1	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0005	364	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0006	364	2	2	0	0	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC20_chr3_195715978_195738551	0/0	t0007	364	1	0	0	1	0	0	copy fasta	MUC20	chr3	195715978	195738551
MUC21_chr6_30978718_30994903	0/0	t0001	1951	199	27	23	119	6	24	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0002	1951	46	17	14	8	3	4	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0003	1951	39	9	1	29	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0004	1952	27	2	4	13	0	8	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0005	1951	16	8	5	1	2	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0006	1951	13	3	6	0	3	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0007	1951	13	1	3	9	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0008	1952	13	2	5	3	1	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0009	1951	12	11	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0010	1951	8	0	0	6	0	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0011	1963	7	1	4	2	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0012	1951	6	1	4	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0013	1951	5	5	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0014	1963	5	0	2	2	1	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0015	1952	5	2	1	1	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0016	1963	4	0	0	4	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0017	1952	4	1	1	1	1	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0018	1952	3	1	2	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0019	1952	3	0	0	2	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0020	1951	2	0	2	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0021	1964	2	0	2	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0022	1952	2	2	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0023	1952	2	0	0	0	0	2	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0024	1952	1	0	0	0	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0025	1952	1	0	0	0	0	1	copy fasta	MUC21	chr6	30978718	30994903