JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MUC21_chr6_30978718_30994903	0/0	t0026	1951	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0027	1951	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0028	1919	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0029	1951	1	1	0	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0030	1964	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0031	1951	1	0	0	0	0	1	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0032	1951	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0033	1952	1	0	0	1	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0034	1951	1	0	1	0	0	0	copy fasta	MUC21	chr6	30978718	30994903
MUC21_chr6_30978718_30994903	0/0	t0035	1951	1	0	0	0	1	0	copy fasta	MUC21	chr6	30978718	30994903
MUC22_chr6_31005474_31040402	0/1	t0001	698	302	63	61	127	14	36	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0002	698	71	1	7	58	0	5	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0003	698	56	25	8	16	1	6	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0004	698	23	0	5	16	1	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0005	698	3	1	1	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0006	698	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0007	698	1	0	0	1	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0008	698	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0009	698	1	0	0	0	0	1	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0010	698	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC22_chr6_31005474_31040402	0/0	t0011	698	1	1	0	0	0	0	copy fasta	MUC22	chr6	31005474	31040402
MUC4_chr3_195741771_195816929	0/1	t0001	516	127	11	23	73	4	15	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0002	518	63	4	21	22	6	10	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0003	512	20	2	6	8	0	4	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0004	512	10	8	2	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0005	518	7	7	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0006	520	3	1	1	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0007	518	3	3	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0008	518	3	3	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0009	518	3	3	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0010	526	2	0	0	2	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0011	516	2	0	0	1	0	1	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0012	518	2	2	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0013	518	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0014	520	1	1	0	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0015	518	1	0	1	0	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC4_chr3_195741771_195816929	0/0	t0016	516	1	0	0	1	0	0	copy fasta	MUC4	chr3	195741771	195816929
MUC5AC_chr11_1152953_1206138	1/1	t0001	484	272	61	63	105	11	30	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	t0002	484	14	6	5	0	3	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	t0003	484	3	3	0	0	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	t0004	484	2	0	0	2	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5AC_chr11_1152953_1206138	0/0	t0005	484	1	0	0	1	0	0	copy fasta	MUC5AC	chr11	1152953	1206138
MUC5B_chr11_1218066_1267172	1/1	t0001	623	341	93	74	112	14	46	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0002	623	2	0	0	2	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0003	623	1	1	0	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0004	623	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0005	623	1	0	1	0	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0006	623	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0007	623	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172
MUC5B_chr11_1218066_1267172	0/0	t0008	623	1	0	0	0	0	1	copy fasta	MUC5B	chr11	1218066	1267172