JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MUC5B_chr11_1218066_1267172	0/0	t0009	623	1	0	0	1	0	0	copy fasta	MUC5B	chr11	1218066	1267172
MUC6_chr11_1007823_1041718	1/1	t0001	697	213	54	27	103	2	25	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0002	697	174	29	57	62	11	15	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0003	694	6	6	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0004	697	5	3	2	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0005	697	3	0	0	3	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0006	697	2	0	0	2	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0007	697	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0008	694	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	t0009	697	1	0	0	0	1	0	copy fasta	MUC6	chr11	1007823	1041718
MUC7_chr4_70467197_70487997	0/1	t0001	1230	106	19	28	41	3	14	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0002	1230	73	6	9	50	4	4	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0003	1230	65	3	9	40	3	10	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0004	1223	64	15	9	24	4	12	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0005	1227	62	0	5	49	2	6	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	1/0	t0006	1230	25	20	4	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0007	1230	14	11	3	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0008	1227	8	7	1	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0009	1230	5	0	0	5	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0010	1231	3	3	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0011	1230	3	3	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0012	1231	2	2	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0013	1230	2	0	0	2	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0014	1223	2	1	0	1	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0015	1230	1	1	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	t0016	1230	1	1	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUCL1_chr12_54849516_54863387	0/0	t0001	213	265	20	51	160	6	28	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	1/1	t0002	213	154	67	27	36	10	12	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	t0003	213	9	7	2	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	t0004	213	2	0	0	2	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL3_chr6_30935973_30959221	0/0	t0001	1131	180	41	37	73	7	22	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/1	t0002	1131	132	9	18	76	7	21	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0003	1131	60	22	12	23	2	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0004	1131	21	4	5	11	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0005	1132	20	0	5	14	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0006	1132	10	6	1	1	0	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0007	1131	9	9	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0008	1131	2	0	2	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0009	1132	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0010	1132	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0011	1132	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0012	1131	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0013	1131	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0014	1132	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	t0015	1131	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUL1_chr1_20494448_20513151	1/0	t0001	1370	254	61	32	131	7	22	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0002	1370	41	0	9	29	1	2	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/1	t0003	1368	32	16	6	0	3	6	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0004	1370	27	5	2	18	0	2	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0005	1368	24	0	1	16	1	6	copy fasta	MUL1	chr1	20494448	20513151