JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MUL1_chr1_20494448_20513151	0/0	t0006	1370	10	0	0	8	0	2	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0007	1370	10	1	4	0	3	2	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0008	1370	8	0	5	0	3	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0009	1367	7	2	3	0	0	2	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0010	1370	7	0	7	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0011	1370	4	3	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0012	1370	3	0	2	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0013	1370	2	0	2	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0014	1370	2	0	0	2	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0015	1370	2	1	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0016	1370	2	1	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0017	1368	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0018	1370	1	0	0	1	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0019	1370	1	0	0	1	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0020	1370	1	0	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0021	1370	1	0	1	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0022	1340	1	0	0	1	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0023	1370	1	0	0	1	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0024	1370	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	t0025	1370	1	0	0	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUS81_chr11_65855433_65871439	1/1	t0001	709	375	73	69	181	8	42	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	t0002	709	12	9	3	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	t0003	709	4	4	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	t0004	709	2	2	0	0	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUS81_chr11_65855433_65871439	0/0	t0005	709	1	0	0	1	0	0	copy fasta	MUS81	chr11	65855433	65871439
MUSK_chr9_110663791_110811558	1/0	t0001	5685	66	0	15	40	1	9	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0002	5684	61	3	16	31	1	10	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0003	5688	59	12	19	13	9	6	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0004	5688	33	0	0	29	0	4	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0005	5688	15	9	0	4	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0006	5688	12	10	2	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0007	5686	12	0	2	9	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0008	5688	11	0	0	6	0	5	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0009	5688	9	9	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0010	5688	5	0	3	0	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0011	5688	4	4	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0012	5688	3	3	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0013	5688	3	3	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0014	5681	3	0	0	3	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0015	5688	3	2	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0016	5688	2	0	2	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0017	5685	2	0	0	2	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0018	5688	2	2	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0019	5688	2	2	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0020	5684	2	0	0	0	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/1	t0021	5688	2	0	0	0	1	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0022	5688	2	0	0	0	0	2	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0023	5688	2	2	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0024	5684	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0025	5688	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558