JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MUSK_chr9_110663791_110811558	0/0	t0026	5685	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0027	5688	1	0	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0028	5688	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0029	5688	1	0	1	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0030	5688	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0031	5684	1	0	0	1	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0032	5688	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0033	5684	1	0	0	0	0	1	copy fasta	MUSK	chr9	110663791	110811558
MUSK_chr9_110663791_110811558	0/0	t0034	5685	1	1	0	0	0	0	copy fasta	MUSK	chr9	110663791	110811558
MUSTN1_chr3_52828121_52840019	0/1	t0001	275	328	53	75	160	10	29	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	1/0	t0002	275	39	35	3	0	0	0	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	0/0	t0003	275	14	0	0	2	0	12	copy fasta	MUSTN1	chr3	52828121	52840019
MUSTN1_chr3_52828121_52840019	0/0	t0004	275	7	0	2	0	4	1	copy fasta	MUSTN1	chr3	52828121	52840019
MUTYH_chr1_45324242_45344970	1/1	t0001	143	395	96	72	171	18	36	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	t0002	143	6	0	0	6	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45344970	0/0	t0003	143	1	0	0	1	0	0	copy fasta	MUTYH	chr1	45324242	45344970
MUTYH_chr1_45324242_45345440	1/1	t0001	251	400	96	69	180	18	35	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	t0002	251	3	0	3	0	0	0	copy fasta	MUTYH	chr1	45324242	45345440
MUTYH_chr1_45324242_45345440	0/0	t0003	251	1	0	0	0	0	1	copy fasta	MUTYH	chr1	45324242	45345440
MVB12A_chr19_17415047_17430332	1/1	t0001	429	266	58	50	121	14	21	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0002	403	111	28	19	50	3	11	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0003	429	5	3	1	0	1	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0004	403	3	3	0	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0005	429	3	0	0	0	0	3	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0006	429	3	0	3	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0007	429	2	0	1	0	0	1	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0008	403	1	0	0	0	0	1	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0009	403	1	0	0	0	0	1	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0010	429	1	0	1	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0011	429	1	1	0	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0012	429	1	1	0	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0013	429	1	0	1	0	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12A_chr19_17415047_17430332	0/0	t0014	429	1	0	0	1	0	0	copy fasta	MVB12A	chr19	17415047	17430332
MVB12B_chr9_126321829_126512040	0/0	t0001	3879	115	10	26	54	6	19	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0002	3883	36	6	6	19	0	5	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0003	3866	25	18	7	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/1	t0004	3862	21	1	1	14	1	3	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0005	3866	9	9	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0006	3879	7	0	6	0	0	1	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0007	3881	7	1	4	0	1	1	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	1/0	t0008	3879	6	5	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0009	3864	5	0	4	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0010	3874	5	5	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0011	3870	5	4	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0012	3883	5	4	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0013	3893	5	0	0	4	0	1	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0014	3879	4	0	3	0	1	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0015	3885	4	1	0	3	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0016	3876	3	0	0	3	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0017	3879	3	0	0	3	0	0	copy fasta	MVB12B	chr9	126321829	126512040