JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MVB12B_chr9_126321829_126512040	0/0	t0018	3879	3	0	0	3	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0019	3883	3	0	0	3	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0020	3895	3	0	0	1	0	2	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0021	3874	2	1	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0022	3868	2	2	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0023	3881	2	2	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0024	3879	2	0	0	2	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0025	3876	2	0	0	2	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0026	3877	2	0	1	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0027	3879	2	0	0	2	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0028	3881	2	2	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0029	3862	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0030	3866	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0031	3868	1	0	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0032	3856	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0033	3862	1	0	0	0	0	1	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0034	3868	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0035	3868	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0036	3868	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0037	3870	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0038	3879	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0039	3879	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0040	3879	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0041	3879	1	0	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0042	3881	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0043	3881	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0044	3879	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0045	3879	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0046	3883	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0047	3877	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0048	3883	1	0	0	0	1	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0049	3883	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0050	3883	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0051	3893	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0052	3879	1	0	0	1	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0053	3885	1	0	1	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0054	3879	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0055	3885	1	1	0	0	0	0	copy fasta	MVB12B	chr9	126321829	126512040
MVB12B_chr9_126321829_126512040	0/0	t0056	3862	1	0	0	0	0	1	copy fasta	MVB12B	chr9	126321829	126512040
MVD_chr16_88646940_88668091	0/0	t0001	597	201	62	26	88	4	21	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/1	t0002	597	183	18	37	99	7	21	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	1/0	t0003	597	14	6	2	1	4	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0004	597	11	1	7	0	1	2	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0005	597	7	6	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0006	597	4	1	3	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0007	597	3	0	1	1	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0008	597	2	0	0	2	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0009	597	2	1	1	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0010	597	1	0	1	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0011	597	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091