JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MVD_chr16_88646940_88668091	0/0	t0012	597	1	0	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0013	597	1	0	0	0	0	1	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0014	597	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0015	597	1	1	0	0	0	0	copy fasta	MVD	chr16	88646940	88668091
MVD_chr16_88646940_88668091	0/0	t0016	597	1	0	0	1	0	0	copy fasta	MVD	chr16	88646940	88668091
MVK_chr12_109568794_109603125	1/1	t0001	1643	283	56	53	130	8	34	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0002	1644	67	14	12	29	6	6	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0003	1642	12	5	0	5	0	2	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0004	1643	4	2	1	0	1	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0005	1643	3	3	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0006	1644	2	2	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0007	1658	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0008	1643	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0009	1643	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0010	1643	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0011	1643	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0012	1643	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0013	1643	1	0	0	0	1	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0014	1643	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0015	1643	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0016	1644	1	1	0	0	0	0	copy fasta	MVK	chr12	109568794	109603125
MVK_chr12_109568794_109603125	0/0	t0017	1629	1	0	0	1	0	0	copy fasta	MVK	chr12	109568794	109603125
MVP_chr16_29815462_29853021	1/0	t0001	117	186	55	25	79	4	22	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/1	t0002	118	37	17	7	5	2	5	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	t0003	117	4	0	0	4	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	t0004	117	2	0	0	2	0	0	copy fasta	MVP	chr16	29815462	29853021
MVP_chr16_29815462_29853021	0/0	t0005	117	1	0	0	0	0	1	copy fasta	MVP	chr16	29815462	29853021
MX1_chr21_41421239_41464212	1/1	t0001	788	154	48	35	47	8	14	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0002	788	129	2	28	78	4	17	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0003	788	65	11	6	43	1	4	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0004	788	18	6	0	9	0	3	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0005	788	11	10	1	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0006	788	5	0	2	2	1	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0007	788	5	5	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0008	785	4	2	2	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0009	788	4	4	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0010	788	4	4	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0011	759	3	0	0	3	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0012	785	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0013	788	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0014	788	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0015	788	1	0	0	0	0	1	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0016	788	1	1	0	0	0	0	copy fasta	MX1	chr21	41421239	41464212
MX1_chr21_41421239_41464212	0/0	t0017	788	1	0	0	0	0	1	copy fasta	MX1	chr21	41421239	41464212
MX2_chr21_41357027_41414393	0/1	t0001	1259	246	44	62	94	15	30	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	1/0	t0002	1261	67	5	4	42	2	13	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0003	1259	17	8	2	7	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0004	1259	13	13	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0005	1259	8	8	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0006	1257	6	4	2	0	0	0	copy fasta	MX2	chr21	41357027	41414393