JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MX2_chr21_41357027_41414393	0/0	t0007	1259	2	0	0	2	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0008	1259	2	0	0	2	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0009	1259	2	0	0	2	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0010	1259	2	0	0	2	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0011	1259	1	0	0	0	1	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0012	1259	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0013	1259	1	0	0	0	0	1	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0014	1261	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0015	1259	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0016	1259	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0017	1257	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0018	1259	1	0	0	1	0	0	copy fasta	MX2	chr21	41357027	41414393
MX2_chr21_41357027_41414393	0/0	t0019	1257	1	1	0	0	0	0	copy fasta	MX2	chr21	41357027	41414393
MXD1_chr2_69910109_69947945	1/0	t0001	4884	97	5	17	58	4	12	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0002	4884	87	11	13	48	5	10	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0003	4884	47	20	1	24	0	2	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0004	4882	42	1	26	15	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0005	4884	36	2	11	20	2	1	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0006	4884	8	1	0	0	0	7	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/1	t0007	4884	6	0	0	5	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0008	4883	5	0	0	5	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0009	4883	5	4	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0010	4883	4	0	0	4	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0011	4882	4	4	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0012	4881	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0013	4884	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0014	4888	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0015	4884	3	2	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0016	4882	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0017	4884	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0018	4884	3	3	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0019	4884	3	2	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0020	4882	2	2	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0021	4882	2	2	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0022	4884	2	2	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0023	4879	2	0	1	0	1	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0024	4884	2	0	0	1	0	1	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0025	4884	2	0	0	2	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0026	4883	2	0	0	1	0	1	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0027	4882	2	2	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0028	4882	2	0	0	2	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0029	4884	2	1	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0030	4872	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0031	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0032	4888	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0033	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0034	4883	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0035	4883	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0036	4884	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0037	4881	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945