JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MXD1_chr2_69910109_69947945	0/0	t0038	4881	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0039	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0040	4883	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0041	4882	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0042	4884	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0043	4879	1	0	0	0	0	1	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0044	4882	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0045	4884	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0046	4884	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0047	4881	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0048	4882	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0049	4884	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0050	4888	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0051	4884	1	0	0	0	0	1	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0052	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0053	4883	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0054	4883	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0055	4883	1	0	1	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0056	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0057	4884	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0058	4882	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0059	4882	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0060	4882	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0061	4882	1	1	0	0	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD1_chr2_69910109_69947945	0/0	t0062	4872	1	0	0	1	0	0	copy fasta	MXD1	chr2	69910109	69947945
MXD3_chr5_177302210_177316898	1/1	t0001	447	401	99	72	164	18	46	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	t0002	447	1	0	0	1	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	t0003	447	1	1	0	0	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD3_chr5_177302210_177316898	0/0	t0004	447	1	0	0	1	0	0	copy fasta	MXD3	chr5	177302210	177316898
MXD4_chr4_2242432_2267109	1/1	t0001	3242	112	8	32	48	3	19	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0002	3241	99	31	21	43	1	3	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0003	3242	30	0	2	28	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0004	3242	14	12	0	0	0	2	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0005	3243	14	1	4	6	1	2	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0006	3242	10	9	1	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0007	3242	8	8	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0008	3243	8	0	2	5	0	1	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0009	3242	6	2	1	3	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0010	3243	6	0	1	5	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0011	3242	4	0	0	4	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0012	3242	3	3	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0013	3241	3	3	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0014	3241	3	3	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0015	3242	3	0	3	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0016	3242	3	0	1	0	2	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0017	3243	2	1	1	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0018	3242	2	2	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0019	3242	2	0	0	2	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0020	3242	2	2	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0021	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109