JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MXD4_chr4_2242432_2267109	0/0	t0022	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0023	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0024	3243	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0025	3243	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0026	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0027	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0028	3241	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0029	3241	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0030	3241	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0031	3241	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0032	3241	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0033	3241	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0034	3241	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0035	3232	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0036	3243	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0037	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0038	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0039	3242	1	0	1	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0040	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0041	3242	1	1	0	0	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0042	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0043	3242	1	0	0	0	1	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0044	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0045	3243	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0046	3243	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0047	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0048	3242	1	0	0	0	0	1	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0049	3242	1	0	0	0	0	1	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0050	3242	1	0	0	0	0	1	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0051	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXD4_chr4_2242432_2267109	0/0	t0052	3242	1	0	0	1	0	0	copy fasta	MXD4	chr4	2242432	2267109
MXI1_chr10_110202605_110292365	0/0	t0001	2582	120	2	22	77	4	15	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0002	2585	60	34	9	11	2	4	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0003	2582	25	0	0	21	0	4	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0004	2587	24	5	6	12	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0005	2582	20	0	0	16	0	4	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0006	2578	17	16	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	1/0	t0007	2583	12	0	8	0	2	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0008	2582	10	1	0	5	0	4	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0009	2582	10	0	5	0	1	4	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0010	2585	7	1	0	5	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0011	2581	6	0	2	3	1	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0012	2586	5	4	0	0	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0013	2581	5	0	0	5	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0014	2584	4	3	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0015	2582	3	0	0	3	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0016	2584	3	2	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0017	2581	3	3	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0018	2582	3	0	0	3	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0019	2582	3	0	0	3	0	0	copy fasta	MXI1	chr10	110202605	110292365