JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MXI1_chr10_110202605_110292365	0/0	t0020	2583	3	0	2	0	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0021	2582	2	0	2	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0022	2578	2	2	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0023	2586	2	1	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0024	2585	2	2	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0025	2579	2	2	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0026	2583	2	0	0	2	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/1	t0027	2583	2	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0028	2582	1	0	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0029	2606	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0030	2585	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0031	2578	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0032	2585	1	1	0	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0033	2579	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0034	2580	1	0	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0035	2582	1	0	1	0	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0036	2582	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0037	2580	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0038	2582	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0039	2585	1	0	0	0	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0040	2583	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0041	2582	1	0	0	0	0	1	copy fasta	MXI1	chr10	110202605	110292365
MXI1_chr10_110202605_110292365	0/0	t0042	2582	1	0	0	1	0	0	copy fasta	MXI1	chr10	110202605	110292365
MXRA5_chrX_3303565_3351652	1/1	t0001	1318	239	37	45	118	9	28	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0002	1318	17	17	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0003	1320	11	8	3	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0004	1318	4	1	1	0	2	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0005	1318	3	0	0	3	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0006	1318	3	2	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0007	1318	3	3	0	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0008	1319	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0009	1319	1	0	1	0	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0010	1317	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA5_chrX_3303565_3351652	0/0	t0011	1317	1	0	0	1	0	0	copy fasta	MXRA5	chrX	3303565	3351652
MXRA7_chr17_76674566_76715965	0/0	t0001	1321	182	21	51	68	13	29	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/1	t0002	1321	123	24	11	77	3	7	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	1/0	t0003	1321	37	28	6	0	0	2	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0004	1324	33	1	1	25	0	6	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0005	1321	7	0	0	7	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0006	1321	7	7	0	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0007	1321	6	6	0	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0008	1325	5	4	1	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0009	1321	5	4	1	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0010	1321	3	3	0	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0011	1321	2	0	0	0	0	2	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0012	1321	2	2	0	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0013	1321	1	0	0	1	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0014	1321	1	0	1	0	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0015	1321	1	0	0	1	0	0	copy fasta	MXRA7	chr17	76674566	76715965
MXRA7_chr17_76674566_76715965	0/0	t0016	1324	1	0	0	1	0	0	copy fasta	MXRA7	chr17	76674566	76715965