JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MXRA8_chr1_1347691_1363555	0/1	t0001	965	213	28	44	87	15	38	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	1/0	t0002	965	42	5	2	28	0	6	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0003	965	22	22	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0004	965	22	11	3	5	1	2	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0005	965	10	8	2	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0006	965	6	0	0	6	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0007	966	5	4	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0008	965	4	1	1	2	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0009	965	3	3	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0010	965	2	2	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0011	965	2	2	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0012	965	2	2	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0013	965	1	1	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0014	965	1	0	1	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0015	965	1	1	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0016	965	1	1	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MXRA8_chr1_1347691_1363555	0/0	t0017	965	1	1	0	0	0	0	copy fasta	MXRA8	chr1	1347691	1363555
MYADML2_chr17_81934645_81952233	0/0	t0001	1529	170	36	35	68	11	20	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/1	t0002	1529	161	32	27	78	7	16	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0003	1529	20	13	1	2	0	4	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0004	1529	6	6	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	1/0	t0005	1529	4	1	2	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0006	1529	2	0	0	2	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0007	1529	2	1	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0008	1529	1	0	0	0	0	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0009	1529	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0010	1529	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0011	1529	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0012	1529	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0013	1529	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0014	1529	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0015	1529	1	0	0	0	0	1	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0016	1529	1	1	0	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0017	1515	1	0	0	1	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADML2_chr17_81934645_81952233	0/0	t0018	1529	1	0	1	0	0	0	copy fasta	MYADML2	chr17	81934645	81952233
MYADM_chr19_53862883_53881435	0/0	t0001	2069	126	8	27	68	6	17	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0002	2069	73	7	20	36	1	9	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0003	2071	46	1	6	36	0	3	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0004	2093	9	8	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0005	2069	8	8	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0006	2073	8	8	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0007	2069	7	0	0	7	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0008	2070	5	1	2	0	1	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0009	2070	4	0	0	4	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0010	2070	4	0	3	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0011	2091	4	4	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0012	2080	4	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0013	2097	3	2	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0014	2068	3	0	1	2	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0015	2068	3	1	1	1	0	0	copy fasta	MYADM	chr19	53862883	53881435