JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MYADM_chr19_53862883_53881435	0/0	t0016	2069	3	0	0	0	3	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0017	2071	3	0	0	0	3	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0018	2084	3	3	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0019	2070	2	0	0	0	2	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0020	2077	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	1/0	t0021	2086	2	0	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0022	2087	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0023	2092	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0024	2097	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0025	2095	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0026	2082	2	2	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0027	2069	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0028	2068	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0029	2069	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0030	2069	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0031	2070	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0032	2069	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0033	2092	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0034	2071	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0035	2069	1	0	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0036	2071	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0037	2061	1	0	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0038	2069	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0039	2092	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0040	2072	1	0	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0041	2073	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0042	2071	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0043	2070	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0044	2069	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0045	2071	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0046	2069	1	0	0	1	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0047	2070	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0048	2092	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0049	2098	1	0	0	0	1	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0050	2087	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/1	t0051	2084	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0052	2070	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0053	2082	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0054	2082	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0055	2096	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0056	2071	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0057	2079	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0058	2082	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0059	2068	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0060	2081	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0061	2065	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0062	2092	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0063	2104	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0064	2092	1	1	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0065	2073	1	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435