JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYADM_chr19_53862883_53881435	0/0	t0066	2081	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0067	2087	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0068	2078	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0069	2075	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0070	2067	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0071	2096	1	1	0	0	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYADM_chr19_53862883_53881435	0/0	t0072	2069	1	0	0	1	0	0	copy fasta	MYADM	chr19	53862883	53881435
MYBBP1A_chr17_4533904_4560384	0/1	t0001	572	227	28	52	103	12	31	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0002	571	155	13	25	103	3	11	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	1/0	t0003	572	34	25	0	6	1	1	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0004	572	13	11	2	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0005	573	9	3	3	1	1	1	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0006	571	7	6	0	1	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0007	570	7	2	2	2	1	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0008	572	4	4	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0009	573	4	1	0	3	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0010	571	3	3	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0011	572	3	0	0	3	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0012	572	2	2	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0013	573	1	1	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0014	570	1	0	1	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0015	572	1	0	1	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0016	571	1	0	1	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0017	572	1	0	1	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBBP1A_chr17_4533904_4560384	0/0	t0018	572	1	1	0	0	0	0	copy fasta	MYBBP1A	chr17	4533904	4560384
MYBL1_chr8_66557175_66618218	1/1	t0001	2903	159	33	23	62	13	26	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0002	2903	24	4	0	14	0	6	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0003	2903	22	20	0	1	0	1	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0004	2899	6	6	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0005	2903	5	5	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0006	2903	5	5	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0007	2903	4	0	1	0	1	2	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0008	2903	4	0	0	4	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0009	2903	2	0	0	2	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0010	2903	2	2	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0011	2903	1	1	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0012	2903	1	0	0	1	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0013	2903	1	1	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0014	2903	1	0	0	0	0	1	copy fasta	MYBL1	chr8	66557175	66618218
MYBL1_chr8_66557175_66618218	0/0	t0015	2903	1	1	0	0	0	0	copy fasta	MYBL1	chr8	66557175	66618218
MYBL2_chr20_43662114_43721482	1/1	t0001	566	258	70	50	108	2	26	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	t0002	566	9	8	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	t0003	564	6	5	1	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBL2_chr20_43662114_43721482	0/0	t0004	566	1	1	0	0	0	0	copy fasta	MYBL2	chr20	43662114	43721482
MYBPC1_chr12_101589971_101691028	1/0	t0001	567	112	24	22	49	2	14	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0002	568	96	32	13	30	4	17	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0003	569	42	1	6	32	0	3	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0004	568	32	1	3	22	2	4	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0005	567	27	20	2	2	0	3	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0006	569	18	0	0	17	1	0	copy fasta	MYBPC1	chr12	101589971	101691028