JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYBPC1_chr12_101589971_101691028	0/0	t0007	567	12	0	1	9	1	1	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0008	567	8	8	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/1	t0009	567	5	0	1	3	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0010	568	3	0	0	3	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0011	568	3	0	0	3	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0012	567	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC1_chr12_101589971_101691028	0/0	t0013	568	1	1	0	0	0	0	copy fasta	MYBPC1	chr12	101589971	101691028
MYBPC2_chr19_50427892_50471321	1/1	t0001	179	394	92	82	154	16	48	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	t0002	179	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC2_chr19_50427892_50471321	0/0	t0003	179	1	1	0	0	0	0	copy fasta	MYBPC2	chr19	50427892	50471321
MYBPC3_chr11_47326406_47357702	1/1	t0001	393	360	78	68	154	18	40	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0002	393	6	6	0	0	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0003	392	3	0	0	0	0	3	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0004	393	2	0	0	2	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0005	393	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0006	393	1	0	0	0	0	1	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPC3_chr11_47326406_47357702	0/0	t0007	393	1	0	0	1	0	0	copy fasta	MYBPC3	chr11	47326406	47357702
MYBPHL_chr1_109287365_109312011	0/1	t0001	278	189	24	41	95	6	22	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0002	278	165	14	27	91	9	24	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	1/0	t0003	278	57	50	2	0	3	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0004	278	21	10	2	9	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0005	278	1	0	0	1	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0006	278	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0007	278	1	0	0	0	0	1	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPHL_chr1_109287365_109312011	0/0	t0008	278	1	1	0	0	0	0	copy fasta	MYBPHL	chr1	109287365	109312011
MYBPH_chr1_203162811_203180826	0/0	t0001	387	227	72	43	78	9	25	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	t0002	385	84	15	5	61	0	3	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/1	t0003	387	75	2	21	30	8	13	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	1/0	t0004	385	58	4	12	37	0	4	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	t0005	385	17	2	3	10	1	1	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	t0006	385	2	0	0	2	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYBPH_chr1_203162811_203180826	0/0	t0007	387	1	1	0	0	0	0	copy fasta	MYBPH	chr1	203162811	203180826
MYB_chr6_135176308_135224172	1/1	t0001	1399	203	33	41	105	6	16	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0002	1400	176	51	21	72	9	23	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0003	1401	5	0	0	5	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0004	1397	4	4	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0005	1400	2	2	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0006	1399	2	0	0	0	1	1	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0007	1397	2	0	0	0	0	2	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0008	1399	1	0	1	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0009	1400	1	0	1	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0010	1400	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0011	1400	1	0	0	1	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0012	1399	1	1	0	0	0	0	copy fasta	MYB	chr6	135176308	135224172
MYB_chr6_135176308_135224172	0/0	t0013	1399	1	0	0	1	0	0	copy fasta	MYB	chr6	135176308	135224172
MYCBP2_chr13_77039657_77332094	1/1	t0001	1041	303	79	55	134	7	26	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	t0002	1040	22	0	2	18	1	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	t0003	1041	4	0	0	4	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	t0004	1041	2	0	0	2	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	t0005	1041	1	0	1	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094