JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYCBP2_chr13_77039657_77332094	0/0	t0006	1041	1	1	0	0	0	0	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBP2_chr13_77039657_77332094	0/0	t0007	1041	1	0	0	0	0	1	copy fasta	MYCBP2	chr13	77039657	77332094
MYCBPAP_chr17_50503439_50536501	1/1	t0001	310	372	94	80	134	16	46	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	t0002	310	2	2	0	0	0	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBPAP_chr17_50503439_50536501	0/0	t0003	310	2	0	0	0	2	0	copy fasta	MYCBPAP	chr17	50503439	50536501
MYCBP_chr1_38857493_38878348	0/1	t0001	2221	140	19	37	65	4	14	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	1/0	t0002	2221	134	29	21	57	6	20	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0003	2221	125	25	12	73	6	9	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0004	2221	10	10	0	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0005	2221	6	4	2	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0006	2221	5	0	0	5	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0007	2221	2	0	0	2	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0008	2221	2	2	0	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0009	2221	2	0	0	1	0	1	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0010	2221	1	1	0	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0011	2221	1	0	1	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0012	2221	1	0	0	1	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0013	2221	1	0	1	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0014	2221	1	0	0	1	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0015	2221	1	0	0	1	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0016	2221	1	1	0	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCBP_chr1_38857493_38878348	0/0	t0017	2221	1	1	0	0	0	0	copy fasta	MYCBP	chr1	38857493	38878348
MYCL_chr1_39890428_39906917	1/1	t0001	2428	282	33	41	178	10	18	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0002	2428	51	25	10	0	6	10	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0003	2428	19	10	3	4	1	1	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0004	2428	15	0	8	1	0	6	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0005	2428	10	10	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0006	2428	9	0	1	8	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0007	2428	6	5	1	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0008	2428	5	4	1	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0009	2428	4	0	0	0	0	4	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0010	2428	2	2	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0011	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0012	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0013	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0014	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0015	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0016	2428	1	0	0	0	0	1	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0017	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0018	2428	1	0	0	0	1	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0019	2428	1	0	0	1	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0020	2428	1	0	1	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCL_chr1_39890428_39906917	0/0	t0021	2428	1	1	0	0	0	0	copy fasta	MYCL	chr1	39890428	39906917
MYCN_chr2_15935550_15952004	1/1	t0001	1219	316	87	54	121	14	38	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0002	1219	105	2	16	77	3	7	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0003	1219	5	0	0	5	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0004	1219	3	0	2	0	0	1	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0005	1219	2	0	0	2	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0006	1219	2	0	0	1	1	0	copy fasta	MYCN	chr2	15935550	15952004
MYCN_chr2_15935550_15952004	0/0	t0007	1219	2	0	0	2	0	0	copy fasta	MYCN	chr2	15935550	15952004