JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYCN_chr2_15935550_15952004	0/0	t0008	1219	1	1	0	0	0	0	copy fasta	MYCN	chr2	15935550	15952004
MYCT1_chr6_152692897_152729569	0/0	t0001	2323	122	8	21	85	5	3	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	1/0	t0002	2323	100	22	20	39	4	14	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0003	2324	98	18	18	45	1	16	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0004	2323	42	6	5	30	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0005	2323	18	0	3	14	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0006	2324	7	0	6	0	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0007	2322	7	7	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0008	2324	6	6	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0009	2323	6	2	0	4	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0010	2323	4	0	0	4	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0011	2323	3	2	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0012	2322	3	2	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0013	2323	2	1	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0014	2322	2	0	1	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0015	2322	2	2	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0016	2324	2	2	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0017	2324	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/1	t0018	2323	1	0	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0019	2323	1	0	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0020	2323	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0021	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0022	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0023	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0024	2322	1	0	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0025	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0026	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0027	2324	1	0	1	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0028	2323	1	0	0	0	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0029	2323	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0030	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0031	2323	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0032	2323	1	0	0	0	0	1	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0033	2324	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0034	2323	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0035	2323	1	1	0	0	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYCT1_chr6_152692897_152729569	0/0	t0036	2322	1	0	0	1	0	0	copy fasta	MYCT1	chr6	152692897	152729569
MYC_chr8_127731231_127747951	1/1	t0001	2357	277	50	62	118	11	34	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0002	2357	74	11	7	49	3	4	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0003	2357	17	0	0	11	0	6	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0004	2357	14	0	3	8	0	3	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0005	2357	12	10	2	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0006	2357	8	4	0	3	0	1	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0007	2357	4	4	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0008	2357	4	4	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0009	2357	4	4	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0010	2357	3	3	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0011	2357	2	2	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0012	2357	2	0	2	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0013	2357	2	0	0	1	0	1	copy fasta	MYC	chr8	127731231	127747951