JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYC_chr8_127731231_127747951	0/0	t0014	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0015	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0016	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0017	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0018	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0019	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0020	2357	1	0	0	0	1	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0021	2357	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0022	2357	1	1	0	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0023	2357	1	0	1	0	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0024	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0025	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0026	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0027	2357	1	0	0	0	0	1	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0028	2357	1	0	0	0	1	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0029	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0030	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0031	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYC_chr8_127731231_127747951	0/0	t0032	2357	1	0	0	1	0	0	copy fasta	MYC	chr8	127731231	127747951
MYD88_chr3_38133661_38148022	1/0	t0001	1777	270	59	47	124	11	28	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/1	t0002	1777	85	3	11	60	2	8	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0003	1777	31	17	10	1	1	2	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0004	1777	10	8	2	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0005	1777	2	0	0	2	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0006	1777	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0007	1777	1	0	1	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0008	1777	1	0	1	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0009	1777	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0010	1777	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0011	1777	1	1	0	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0012	1777	1	1	0	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0013	1777	1	1	0	0	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0014	1777	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYD88_chr3_38133661_38148022	0/0	t0015	1777	1	0	0	1	0	0	copy fasta	MYD88	chr3	38133661	38148022
MYDGF_chr19_4652545_4675342	1/1	t0001	469	291	31	72	133	15	38	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0002	469	104	55	6	40	3	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0003	469	5	5	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0004	469	2	2	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0005	469	2	0	2	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0006	469	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0007	469	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0008	459	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0009	469	1	1	0	0	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0010	469	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYDGF_chr19_4652545_4675342	0/0	t0011	469	1	0	0	1	0	0	copy fasta	MYDGF	chr19	4652545	4675342
MYEF2_chr15_48129632_48183295	0/0	t0001	8336	59	11	1	41	0	6	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/1	t0002	8335	48	5	11	22	0	9	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0003	8335	34	14	4	16	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0004	8333	16	1	8	6	0	1	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0005	8336	13	11	0	2	0	0	copy fasta	MYEF2	chr15	48129632	48183295