JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYEF2_chr15_48129632_48183295	0/0	t0006	8336	12	1	3	8	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0007	8335	7	5	2	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0008	8336	6	5	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0009	8335	6	1	0	5	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0010	8335	6	0	0	6	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0011	8337	5	1	0	4	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0012	8335	3	0	0	2	0	1	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0013	8333	3	3	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0014	8336	3	3	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0015	8334	3	0	0	3	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0016	8336	3	0	2	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0017	8335	2	1	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0018	8335	2	1	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0019	8335	2	2	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0020	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0021	8335	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0022	8335	1	0	0	0	0	1	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0023	8335	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0024	8333	1	0	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0025	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0026	8335	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0027	8333	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0028	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0029	8333	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0030	8335	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	1/0	t0031	8335	1	0	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0032	8335	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0033	8335	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0034	8336	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0035	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0036	8335	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0037	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0038	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0039	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0040	8338	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0041	8335	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0042	8336	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0043	8337	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0044	8336	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0045	8336	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0046	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0047	8336	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0048	8336	1	0	1	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0049	8336	1	1	0	0	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEF2_chr15_48129632_48183295	0/0	t0050	8335	1	0	0	1	0	0	copy fasta	MYEF2	chr15	48129632	48183295
MYEOV_chr11_69289155_69302287	1/0	t0001	1440	178	11	51	88	10	17	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0002	1440	105	48	9	40	1	7	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0003	1440	93	22	9	44	2	16	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0004	1440	13	13	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0005	1440	9	0	0	9	0	0	copy fasta	MYEOV	chr11	69289155	69302287