JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYEOV_chr11_69289155_69302287	0/1	t0006	1440	8	0	3	0	2	2	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0007	1440	2	2	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0008	1440	2	0	0	0	0	2	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0009	1440	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0010	1440	1	0	0	0	1	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0011	1440	1	0	0	1	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYEOV_chr11_69289155_69302287	0/0	t0012	1440	1	1	0	0	0	0	copy fasta	MYEOV	chr11	69289155	69302287
MYF5_chr12_80711912_80724671	1/0	t0001	773	243	13	49	141	8	31	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0002	773	129	64	19	43	0	3	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/1	t0003	773	28	0	10	5	6	6	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0004	772	9	9	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0005	773	7	7	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0006	773	6	0	0	0	0	6	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0007	773	5	0	0	5	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0008	773	2	2	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF5_chr12_80711912_80724671	0/0	t0009	773	1	1	0	0	0	0	copy fasta	MYF5	chr12	80711912	80724671
MYF6_chr12_80702634_80714474	1/0	t0001	601	209	13	51	112	5	27	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0002	601	127	76	16	33	0	2	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/1	t0003	601	28	0	11	5	5	6	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0004	601	9	0	0	9	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0005	601	3	3	0	0	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0006	601	3	0	0	3	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0007	601	1	0	0	1	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0008	601	1	0	0	0	0	1	copy fasta	MYF6	chr12	80702634	80714474
MYF6_chr12_80702634_80714474	0/0	t0009	601	1	0	0	1	0	0	copy fasta	MYF6	chr12	80702634	80714474
MYG1_chr12_53294695_53312177	1/1	t0001	72	367	90	76	155	10	34	copy fasta	MYG1	chr12	53294695	53312177
MYG1_chr12_53294695_53312177	0/0	t0002	72	1	0	0	1	0	0	copy fasta	MYG1	chr12	53294695	53312177
MYH10_chr17_8469224_8635725	0/1	t0001	1684	122	18	23	61	6	13	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0002	1684	88	18	21	35	2	12	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0003	1684	14	4	6	2	2	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0004	1684	10	9	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	1/0	t0005	1684	8	6	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0006	1684	6	6	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0007	1684	4	0	0	4	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0008	1684	4	4	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0009	1684	3	2	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0010	1684	3	3	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0011	1684	2	2	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0012	1684	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0013	1684	1	0	0	1	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0014	1684	1	0	0	0	0	1	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0015	1684	1	0	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0016	1684	1	0	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0017	1684	1	0	0	1	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0018	1684	1	0	1	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0019	1684	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0020	1684	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH10_chr17_8469224_8635725	0/0	t0021	1684	1	1	0	0	0	0	copy fasta	MYH10	chr17	8469224	8635725
MYH11_chr16_15698135_15862028	0/1	t0001	962	254	61	44	92	14	42	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0002	962	12	3	4	2	1	2	copy fasta	MYH11	chr16	15698135	15862028