JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYH11_chr16_15698135_15862028	0/0	t0003	963	9	9	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0004	962	6	5	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0005	963	4	4	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0006	963	2	1	1	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0007	962	2	0	0	2	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0008	962	2	0	2	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0009	962	1	0	0	0	1	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0010	962	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0011	962	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0012	962	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0013	962	1	0	0	1	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH11_chr16_15698135_15862028	0/0	t0014	962	1	1	0	0	0	0	copy fasta	MYH11	chr16	15698135	15862028
MYH13_chr17_10295865_10378006	1/1	t0001	178	381	88	80	158	16	37	copy fasta	MYH13	chr17	10295865	10378006
MYH13_chr17_10295865_10378006	0/0	t0002	178	1	0	0	0	0	1	copy fasta	MYH13	chr17	10295865	10378006
MYH14_chr19_50198622_50315540	0/0	t0001	804	172	67	29	55	5	16	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/1	t0002	804	58	4	21	13	6	13	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	1/0	t0003	804	46	4	14	19	1	7	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0004	804	4	0	0	0	0	4	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0005	804	4	0	0	4	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0006	804	3	3	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0007	806	3	3	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0008	804	2	2	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0009	804	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0010	806	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0011	804	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0012	804	1	1	0	0	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0013	804	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH14_chr19_50198622_50315540	0/0	t0014	804	1	0	0	1	0	0	copy fasta	MYH14	chr19	50198622	50315540
MYH15_chr3_108375368_108515596	1/1	t0001	1244	152	64	23	39	4	20	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0002	1245	101	11	22	54	3	11	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0003	1244	19	10	3	5	0	1	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0004	1245	18	4	12	0	1	1	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0005	1244	3	0	2	0	1	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0006	1245	2	0	1	0	1	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0007	1244	2	2	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0008	1245	2	0	0	2	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0009	1245	2	0	2	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0010	1245	1	0	0	0	0	1	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0011	1244	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0012	1244	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0013	1244	1	1	0	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH15_chr3_108375368_108515596	0/0	t0014	1245	1	0	1	0	0	0	copy fasta	MYH15	chr3	108375368	108515596
MYH1_chr17_10487307_10523542	1/1	t0001	204	359	90	82	133	12	40	copy fasta	MYH1	chr17	10487307	10523542
MYH1_chr17_10487307_10523542	0/0	t0002	110	1	0	0	1	0	0	copy fasta	MYH1	chr17	10487307	10523542
MYH2_chr17_10516148_10554658	1/1	t0001	219	342	83	76	131	10	40	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	t0002	219	8	0	0	7	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	t0003	219	1	1	0	0	0	0	copy fasta	MYH2	chr17	10516148	10554658
MYH2_chr17_10516148_10554658	0/0	t0004	219	1	0	0	0	0	1	copy fasta	MYH2	chr17	10516148	10554658
MYH3_chr17_10623532_10662309	1/1	t0001	210	379	90	73	158	14	42	copy fasta	MYH3	chr17	10623532	10662309
MYH3_chr17_10623532_10662309	0/0	t0002	210	1	0	1	0	0	0	copy fasta	MYH3	chr17	10623532	10662309