JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYH4_chr17_10438290_10474559	1/1	t0001	197	337	94	71	116	12	42	copy fasta	MYH4	chr17	10438290	10474559
MYH4_chr17_10438290_10474559	0/0	t0002	197	1	0	1	0	0	0	copy fasta	MYH4	chr17	10438290	10474559
MYH6_chr14_23376987_23413273	1/1	t0001	121	368	96	76	136	14	44	copy fasta	MYH6	chr14	23376987	23413273
MYH6_chr14_23376987_23413273	0/0	t0002	121	2	2	0	0	0	0	copy fasta	MYH6	chr14	23376987	23413273
MYH7B_chr20_34950868_35007437	0/1	t0001	726	174	31	33	83	6	20	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0002	726	95	35	19	26	5	10	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0003	726	57	27	7	14	2	7	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0004	726	4	2	1	0	1	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	1/0	t0005	726	2	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0006	726	2	0	0	2	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0007	726	1	0	0	0	0	1	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0008	726	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0009	726	1	0	0	1	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7B_chr20_34950868_35007437	0/0	t0010	726	1	1	0	0	0	0	copy fasta	MYH7B	chr20	34950868	35007437
MYH7_chr14_23407740_23440660	1/1	t0001	220	324	96	65	109	14	38	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	t0002	220	20	2	4	8	2	4	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	t0003	220	1	0	0	1	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH7_chr14_23407740_23440660	0/0	t0004	220	1	0	1	0	0	0	copy fasta	MYH7	chr14	23407740	23440660
MYH8_chr17_10385322_10426950	1/0	t0001	228	185	57	49	43	8	27	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/1	t0002	228	129	22	21	67	3	15	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	t0003	228	4	0	1	0	1	2	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	t0004	228	2	2	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	t0005	228	2	2	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	t0006	228	1	0	1	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH8_chr17_10385322_10426950	0/0	t0007	228	1	1	0	0	0	0	copy fasta	MYH8	chr17	10385322	10426950
MYH9_chr22_36276280_36392967	0/0	t0001	1569	54	4	7	33	3	7	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/1	t0002	1569	45	2	19	7	5	11	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0003	1569	40	9	13	3	3	12	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	1/0	t0004	1569	39	16	6	14	0	2	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0005	1568	19	19	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0006	1569	12	12	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0007	1569	12	10	2	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0008	1569	6	6	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0009	1568	4	1	2	0	1	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0010	1568	2	2	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0011	1569	2	0	0	2	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0012	1569	1	0	1	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0013	1569	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0014	1569	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0015	1569	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0016	1569	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0017	1569	1	1	0	0	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYH9_chr22_36276280_36392967	0/0	t0018	1569	1	0	0	1	0	0	copy fasta	MYH9	chr22	36276280	36392967
MYL10_chr7_101608330_101634296	0/1	t0001	324	385	90	78	160	18	38	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	0/0	t0002	324	8	8	0	0	0	0	copy fasta	MYL10	chr7	101608330	101634296
MYL10_chr7_101608330_101634296	1/0	t0003	324	5	0	2	0	0	2	copy fasta	MYL10	chr7	101608330	101634296
MYL11_chr16_30369802_30382991	1/1	t0001	148	304	86	70	96	14	36	copy fasta	MYL11	chr16	30369802	30382991
MYL12A_chr18_3242801_3261236	1/1	t0001	443	354	75	71	156	12	38	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0002	443	82	15	6	60	0	1	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0003	443	6	6	0	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236