JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYL12A_chr18_3242801_3261236	0/0	t0004	443	4	0	0	3	0	1	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0005	443	1	0	0	1	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0006	443	1	0	0	1	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0007	443	1	0	1	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0008	443	1	0	0	1	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0009	443	1	1	0	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12A_chr18_3242801_3261236	0/0	t0010	443	1	1	0	0	0	0	copy fasta	MYL12A	chr18	3242801	3261236
MYL12B_chr18_3257133_3283461	0/1	t0001	647	211	21	41	117	6	25	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0002	647	177	66	22	70	6	13	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	1/0	t0003	645	31	6	4	18	0	2	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0004	646	3	3	0	0	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0005	645	3	0	0	3	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0006	647	1	1	0	0	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0007	647	1	0	1	0	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0008	647	1	0	0	1	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0009	647	1	1	0	0	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL12B_chr18_3257133_3283461	0/0	t0010	645	1	0	0	1	0	0	copy fasta	MYL12B	chr18	3257133	3283461
MYL1_chr2_210285150_210320174	1/1	t0001	465	390	88	73	171	12	44	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0002	465	2	2	0	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0003	465	1	0	0	1	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0004	465	1	1	0	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0005	465	1	1	0	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0006	465	1	0	1	0	0	0	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0007	465	1	0	0	0	0	1	copy fasta	MYL1	chr2	210285150	210320174
MYL1_chr2_210285150_210320174	0/0	t0008	465	1	0	0	0	0	1	copy fasta	MYL1	chr2	210285150	210320174
MYL2_chr12_110905845_110925579	1/1	t0001	283	367	82	60	159	16	48	copy fasta	MYL2	chr12	110905845	110925579
MYL2_chr12_110905845_110925579	0/0	t0002	283	1	0	0	1	0	0	copy fasta	MYL2	chr12	110905845	110925579
MYL3_chr3_46852872_46868444	1/1	t0001	298	286	55	68	120	14	27	copy fasta	MYL3	chr3	46852872	46868444
MYL3_chr3_46852872_46868444	0/0	t0002	298	107	38	6	48	2	13	copy fasta	MYL3	chr3	46852872	46868444
MYL3_chr3_46852872_46868444	0/0	t0003	298	2	0	0	2	0	0	copy fasta	MYL3	chr3	46852872	46868444
MYL3_chr3_46852872_46868444	0/0	t0004	298	1	1	0	0	0	0	copy fasta	MYL3	chr3	46852872	46868444
MYL4_chr17_47204348_47228679	1/1	t0001	262	410	92	80	178	14	44	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	t0002	262	2	2	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL4_chr17_47204348_47228679	0/0	t0003	262	2	2	0	0	0	0	copy fasta	MYL4	chr17	47204348	47228679
MYL5_chr4_669542_687028	1/1	t0001	419	351	61	67	172	13	36	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0002	419	42	20	12	0	5	5	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0003	419	11	9	2	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0004	419	4	0	3	0	0	1	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0005	419	2	0	0	2	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0006	419	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL5_chr4_669542_687028	0/0	t0007	419	1	1	0	0	0	0	copy fasta	MYL5	chr4	669542	687028
MYL6B_chr12_56147587_56162982	0/0	t0001	202	360	86	64	164	16	30	copy fasta	MYL6B	chr12	56147587	56162982
MYL6_chr12_56153359_56166579	1/1	t0001	253	335	83	69	141	12	28	copy fasta	MYL6	chr12	56153359	56166579
MYL6_chr12_56153359_56166579	0/0	t0002	253	2	1	1	0	0	0	copy fasta	MYL6	chr12	56153359	56166579
MYL6_chr12_56153359_56166579	0/0	t0003	253	1	0	0	1	0	0	copy fasta	MYL6	chr12	56153359	56166579
MYL7_chr7_44133864_44146332	1/1	t0001	85	440	98	78	202	16	44	copy fasta	MYL7	chr7	44133864	44146332
MYL9_chr20_36536519_36556447	0/1	t0001	2268	186	21	37	95	9	23	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	1/0	t0002	2268	168	40	30	74	5	18	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0003	2268	8	7	0	0	1	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0004	2268	8	8	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447