JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYL9_chr20_36536519_36556447	0/0	t0005	2267	6	6	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0006	2268	4	4	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0007	2268	3	0	1	0	1	1	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0008	2268	2	2	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0009	2268	2	0	0	2	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0010	2268	2	2	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0011	2268	2	0	0	2	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0012	2252	1	1	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0013	2223	1	0	0	1	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0014	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0015	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0016	2268	1	0	0	0	0	1	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0017	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0018	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0019	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0020	2268	1	1	0	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0021	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0022	2267	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0023	2268	1	0	0	0	0	1	copy fasta	MYL9	chr20	36536519	36556447
MYL9_chr20_36536519_36556447	0/0	t0024	2268	1	0	1	0	0	0	copy fasta	MYL9	chr20	36536519	36556447
MYLIP_chr6_16124086_16153248	1/0	t0001	1735	200	29	35	101	8	26	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0002	1736	49	2	0	47	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0003	1737	41	25	7	4	4	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0004	1736	32	1	2	29	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/1	t0005	1736	29	10	11	0	0	7	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0006	1735	11	9	2	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0007	1736	7	6	1	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0008	1737	6	5	1	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0009	1735	6	0	0	6	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0010	1736	4	0	0	4	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0011	1735	4	4	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0012	1736	4	0	0	3	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0013	1736	4	0	2	0	0	2	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0014	1735	4	0	0	3	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0015	1737	2	2	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0016	1736	2	1	1	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0017	1736	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0018	1737	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0019	1737	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0020	1737	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0021	1736	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0022	1736	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0023	1735	1	0	1	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0024	1735	1	0	1	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0025	1735	1	0	0	1	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0026	1735	1	1	0	0	0	0	copy fasta	MYLIP	chr6	16124086	16153248
MYLIP_chr6_16124086_16153248	0/0	t0027	1736	1	0	0	0	0	1	copy fasta	MYLIP	chr6	16124086	16153248
MYLK2_chr20_31814356_31839684	1/1	t0001	1009	312	81	73	107	14	35	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0002	1009	6	0	5	0	1	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0003	1009	6	6	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684