JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYLK2_chr20_31814356_31839684	0/0	t0004	1009	2	0	0	1	0	1	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0005	1009	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0006	1009	1	0	0	0	1	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0007	1009	1	0	0	1	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK2_chr20_31814356_31839684	0/0	t0008	1009	1	1	0	0	0	0	copy fasta	MYLK2	chr20	31814356	31839684
MYLK3_chr16_46697282_46753344	0/1	t0001	5573	144	42	34	40	7	20	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0002	5574	40	21	12	1	3	3	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	1/0	t0003	5574	8	6	1	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0004	5573	5	0	0	0	0	5	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0005	5573	3	0	0	3	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0006	5574	3	3	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0007	5574	2	1	0	0	0	1	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0008	5574	2	2	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0009	5573	2	0	0	0	0	2	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0010	5574	1	0	0	0	0	1	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0011	5573	1	0	1	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0012	5573	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0013	5573	1	0	0	0	0	1	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0014	5573	1	0	0	0	0	1	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0015	5573	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0016	5573	1	0	0	1	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0017	5573	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK3_chr16_46697282_46753344	0/0	t0018	5574	1	1	0	0	0	0	copy fasta	MYLK3	chr16	46697282	46753344
MYLK4_chr6_2658637_2755922	0/0	t0001	4588	70	0	13	53	0	4	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0002	4588	66	0	6	50	5	5	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0003	4584	59	17	18	21	1	2	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0004	4585	27	5	7	5	3	7	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/1	t0005	4588	25	0	7	8	2	7	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0006	4589	8	8	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	1/0	t0007	4588	7	5	1	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0008	4588	6	0	6	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0009	4588	6	1	4	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0010	4588	5	1	3	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0011	4588	5	0	0	5	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0012	4588	4	0	0	3	1	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0013	4584	4	0	0	4	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0014	4588	3	3	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0015	4588	3	1	2	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0016	4587	3	3	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0017	4588	3	3	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0018	4588	3	3	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0019	4588	3	0	0	2	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0020	4588	3	0	0	0	1	2	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0021	4588	3	0	1	0	2	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0022	4587	3	3	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0023	4584	3	0	2	0	1	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0024	4586	2	2	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0025	4589	2	2	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0026	4588	2	2	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0027	4588	2	1	0	0	1	0	copy fasta	MYLK4	chr6	2658637	2755922