JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYLK4_chr6_2658637_2755922	0/0	t0028	4588	2	0	0	2	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0029	4588	2	0	2	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0030	4585	2	2	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0031	4585	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0032	4585	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0033	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0034	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0035	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0036	4585	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0037	4587	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0038	4585	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0039	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0040	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0041	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0042	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0043	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0044	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0045	4588	1	0	0	0	1	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0046	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0047	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0048	4587	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0049	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0050	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0051	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0052	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0053	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0054	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0055	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0056	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0057	4585	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0058	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0059	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0060	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0061	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0062	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0063	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0064	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0065	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0066	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0067	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0068	4587	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0069	4589	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0070	4585	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0071	4584	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0072	4585	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0073	4588	1	1	0	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0074	4588	1	0	0	1	0	0	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0075	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0076	4588	1	0	0	0	0	1	copy fasta	MYLK4	chr6	2658637	2755922
MYLK4_chr6_2658637_2755922	0/0	t0077	4588	1	0	1	0	0	0	copy fasta	MYLK4	chr6	2658637	2755922