Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARID3A_chr19_921035_980939	0/0	t0184	4172	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0185	4172	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0186	4172	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0187	4172	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0188	4175	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0189	4172	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0190	4169	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0191	4171	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0192	4176	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0193	4175	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0194	4175	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0195	4175	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0196	4189	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0197	4182	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0198	4183	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0199	4184	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0200	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0201	4185	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0202	4185	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0203	4185	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0204	4186	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0205	4189	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0206	4182	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0207	4182	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0208	4183	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0209	4181	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0210	4183	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0211	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0212	4183	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0213	4183	1	0	0	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0214	4183	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0215	4184	1	0	0	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0216	4185	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0217	4185	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0218	4184	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0219	4185	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0220	4189	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0221	4194	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0222	4182	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0223	4181	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0224	4181	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0225	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0226	4182	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0227	4182	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0228	4174	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0229	4174	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0230	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0231	4193	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0232	4185	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0233	4187	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939