JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYLK_chr3_123605049_123889332	0/0	t0050	4376	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	t0051	4375	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	t0052	4370	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	t0053	4373	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	t0054	4373	1	0	1	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYLK_chr3_123605049_123889332	0/0	t0055	4378	1	1	0	0	0	0	copy fasta	MYLK	chr3	123605049	123889332
MYMK_chr9_133509586_133529959	1/1	t0001	166	292	47	61	137	14	31	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	t0002	166	163	51	21	70	4	17	copy fasta	MYMK	chr9	133509586	133529959
MYMK_chr9_133509586_133529959	0/0	t0003	166	1	0	0	1	0	0	copy fasta	MYMK	chr9	133509586	133529959
MYMX_chr6_44211926_44223234	0/0	t0001	574	184	36	34	87	5	22	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	1/0	t0002	574	182	21	37	101	5	17	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/1	t0003	574	63	31	11	5	6	9	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	t0004	574	4	4	0	0	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYMX_chr6_44211926_44223234	0/0	t0005	574	1	0	0	1	0	0	copy fasta	MYMX	chr6	44211926	44223234
MYNN_chr3_169768396_169794716	1/1	t0001	3137	147	32	35	51	7	20	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0002	3137	131	19	21	76	1	14	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0003	3137	18	0	3	14	0	1	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0004	3137	15	13	2	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0005	3137	11	11	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0006	3137	7	6	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0007	3137	4	4	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0008	3137	3	1	2	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0009	3137	2	2	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0010	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0011	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0012	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0013	3137	1	0	1	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0014	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0015	3137	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0016	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0017	3137	1	1	0	0	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0018	3137	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0019	3137	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0020	3137	1	0	0	1	0	0	copy fasta	MYNN	chr3	169768396	169794716
MYNN_chr3_169768396_169794716	0/0	t0021	3137	1	0	0	0	0	1	copy fasta	MYNN	chr3	169768396	169794716
MYO10_chr5_16656907_16941288	0/0	t0001	5253	31	0	7	20	1	3	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/1	t0002	5250	9	0	1	5	0	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0003	5250	8	2	3	0	1	2	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0004	5249	6	3	2	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0005	5254	6	0	1	4	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0006	5275	5	1	0	3	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0007	5253	5	0	2	3	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0008	5285	4	0	0	4	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0009	5256	4	0	0	4	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0010	5274	4	1	0	3	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0011	5275	4	0	0	4	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0012	5248	3	1	2	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0013	5247	3	3	0	0	0	0	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0014	5250	3	0	2	0	0	1	copy fasta	MYO10	chr5	16656907	16941288
MYO10_chr5_16656907_16941288	0/0	t0015	5284	3	0	0	2	0	1	copy fasta	MYO10	chr5	16656907	16941288