JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO15A_chr17_18103756_18184800	0/1	t0004	1219	44	9	5	18	1	10	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0005	1219	23	9	7	0	1	6	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0006	1219	6	0	5	0	1	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0007	1219	5	2	1	2	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0008	1219	3	0	3	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0009	1219	2	2	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0010	1219	1	0	1	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0011	1219	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0012	1219	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0013	1219	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0014	1219	1	1	0	0	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15A_chr17_18103756_18184800	0/0	t0015	1219	1	0	0	1	0	0	copy fasta	MYO15A	chr17	18103756	18184800
MYO15B_chr17_75582800_75631849	0/1	t0001	624	322	65	63	135	16	42	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0002	624	41	17	11	8	0	5	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	1/0	t0003	624	11	8	2	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0004	624	4	4	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0005	624	1	0	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0006	624	1	0	0	0	0	1	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0007	624	1	1	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0008	624	1	0	0	1	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0009	624	1	0	1	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO15B_chr17_75582800_75631849	0/0	t0010	624	1	1	0	0	0	0	copy fasta	MYO15B	chr17	75582800	75631849
MYO16_chr13_108624611_109213005	0/0	t0001	1404	61	35	8	15	0	3	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	1/0	t0002	1404	31	3	11	12	1	3	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0003	1394	14	9	4	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0004	1394	11	10	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0005	1404	5	0	2	2	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0006	1396	3	1	2	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0007	1406	3	2	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0008	1406	3	2	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0009	1394	2	0	0	0	1	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/1	t0010	1404	2	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0011	1398	2	0	1	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0012	1404	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0013	1404	2	0	1	0	0	1	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0014	1404	2	1	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0015	1404	2	2	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0016	1394	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0017	1404	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0018	1404	1	0	1	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0019	1404	1	0	0	1	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0020	1404	1	0	0	0	1	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0021	1404	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO16_chr13_108624611_109213005	0/0	t0022	1404	1	1	0	0	0	0	copy fasta	MYO16	chr13	108624611	109213005
MYO18A_chr17_29066122_29185398	0/0	t0001	3813	118	13	31	61	2	11	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0002	3815	40	10	13	2	4	11	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0003	3812	20	17	1	2	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	1/0	t0004	3816	17	2	2	8	0	4	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/1	t0005	3814	14	7	4	0	0	2	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0006	3815	11	2	0	5	0	4	copy fasta	MYO18A	chr17	29066122	29185398