JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO18A_chr17_29066122_29185398	0/0	t0007	3814	10	7	0	2	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0008	3813	9	0	0	8	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0009	3818	6	6	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0010	3817	6	0	4	2	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0011	3814	6	4	2	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0012	3814	6	3	1	0	1	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0013	3809	4	1	3	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0014	3815	3	0	2	0	1	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0015	3813	3	3	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0016	3814	3	0	1	0	1	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0017	3812	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0018	3812	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0019	3813	2	0	0	0	0	2	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0020	3815	2	2	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0021	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0022	3814	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0023	3815	1	0	0	0	1	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0024	3813	1	0	0	0	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0025	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0026	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0027	3818	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0028	3817	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0029	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0030	3813	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0031	3812	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0032	3815	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0033	3812	1	0	0	0	0	1	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0034	3812	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0035	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0036	3813	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0037	3813	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0038	3815	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0039	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0040	3815	1	0	1	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0041	3814	1	1	0	0	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18A_chr17_29066122_29185398	0/0	t0042	3813	1	0	0	1	0	0	copy fasta	MYO18A	chr17	29066122	29185398
MYO18B_chr22_25737188_26036045	1/1	t0001	831	188	47	48	61	8	22	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0002	831	33	31	2	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0003	831	2	0	0	2	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0004	825	1	0	0	1	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0005	831	1	1	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0006	831	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0007	831	1	0	0	0	0	1	copy fasta	MYO18B	chr22	25737188	26036045
MYO18B_chr22_25737188_26036045	0/0	t0008	831	1	1	0	0	0	0	copy fasta	MYO18B	chr22	25737188	26036045
MYO19_chr17_36490636_36539868	0/1	t0001	1019	335	63	61	159	12	39	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0002	1019	10	8	2	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0003	1019	10	3	0	6	0	1	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0004	1019	3	0	0	3	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0005	1019	2	0	0	2	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0006	1019	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868