JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO19_chr17_36490636_36539868	0/0	t0007	1019	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0008	1019	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0009	1019	2	2	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0010	1019	1	0	1	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0011	1019	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0012	1019	1	1	0	0	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0013	1019	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO19_chr17_36490636_36539868	0/0	t0014	1019	1	0	0	1	0	0	copy fasta	MYO19	chr17	36490636	36539868
MYO1A_chr12_57023517_57055129	1/1	t0001	502	334	88	70	120	14	40	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	t0002	502	9	0	4	5	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	t0003	502	3	0	1	2	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	t0004	502	1	0	1	0	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1A_chr12_57023517_57055129	0/0	t0005	502	1	0	0	1	0	0	copy fasta	MYO1A	chr12	57023517	57055129
MYO1B_chr2_191240404_191430386	1/0	t0001	1659	52	41	4	4	1	1	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/1	t0002	1659	48	9	11	18	3	6	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0003	1659	37	6	7	16	1	7	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0004	1659	9	9	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0005	1659	9	4	1	4	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0006	1659	7	6	1	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0007	1659	4	4	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0008	1659	2	2	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0009	1659	1	0	0	0	1	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1B_chr2_191240404_191430386	0/0	t0010	1659	1	1	0	0	0	0	copy fasta	MYO1B	chr2	191240404	191430386
MYO1C_chr17_1459186_1497686	0/0	t0001	1742	170	24	43	77	6	20	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	1/1	t0002	1740	157	18	26	84	9	18	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0003	1743	12	12	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0004	1742	12	12	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0005	1741	11	2	3	5	1	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0006	1742	10	1	4	5	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0007	1740	9	9	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0008	1742	9	0	3	0	0	6	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0009	1740	6	4	2	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0010	1739	4	0	0	4	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0011	1739	4	4	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0012	1742	4	4	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0013	1740	4	0	2	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0014	1741	2	0	0	2	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0015	1727	2	0	0	0	0	2	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0016	1741	2	2	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0017	1742	2	0	0	0	0	2	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0018	1742	2	1	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0019	1739	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0020	1742	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0021	1739	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0022	1742	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0023	1742	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0024	1741	1	0	1	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0025	1740	1	1	0	0	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1C_chr17_1459186_1497686	0/0	t0026	1741	1	0	0	1	0	0	copy fasta	MYO1C	chr17	1459186	1497686
MYO1D_chr17_32487522_32882124	1/1	t0001	2490	41	6	10	17	1	5	copy fasta	MYO1D	chr17	32487522	32882124