JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO1D_chr17_32487522_32882124	0/0	t0002	2489	29	8	7	7	2	5	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0003	2490	29	19	2	3	3	2	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0004	2490	20	1	7	8	0	4	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0005	2490	18	1	0	16	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0006	2489	14	4	4	4	0	2	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0007	2490	14	7	3	2	2	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0008	2490	13	0	2	10	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0009	2490	7	7	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0010	2489	6	2	3	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0011	2490	5	3	2	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0012	2490	4	0	2	0	0	2	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0013	2490	4	0	0	4	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0014	2489	3	0	2	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0015	2490	3	0	3	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0016	2489	2	2	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0017	2489	2	0	1	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0018	2490	2	2	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0019	2489	2	0	0	0	0	2	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0020	2490	2	2	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0021	2489	2	0	1	0	1	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0022	2489	2	1	0	0	1	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0023	2490	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0024	2490	1	0	0	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0025	2490	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0026	2489	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0027	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0028	2489	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0029	2490	1	0	0	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0030	2489	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0031	2489	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0032	2489	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0033	2489	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0034	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0035	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0036	2490	1	0	0	0	0	1	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0037	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0038	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0039	2489	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0040	2490	1	1	0	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0041	2490	1	0	0	1	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1D_chr17_32487522_32882124	0/0	t0042	2489	1	0	1	0	0	0	copy fasta	MYO1D	chr17	32487522	32882124
MYO1E_chr15_59127434_59377871	0/0	t0001	5318	56	22	9	17	4	4	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0002	5300	31	11	8	9	1	2	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/1	t0003	5318	25	2	8	9	1	4	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0004	5300	12	0	5	6	1	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0005	5300	12	0	0	12	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0006	5318	5	5	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0007	5300	5	5	0	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0008	5300	4	0	4	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871
MYO1E_chr15_59127434_59377871	0/0	t0009	5329	4	2	2	0	0	0	copy fasta	MYO1E	chr15	59127434	59377871