Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARID3A_chr19_921035_980939	0/0	t0234	4186	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0235	4188	1	0	0	0	0	1	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0236	4188	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0237	4196	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0238	4177	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0239	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0240	4184	1	0	1	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0241	4184	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0242	4184	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0243	4185	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0244	4185	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0245	4185	1	0	0	0	1	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0246	4191	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0247	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0248	4183	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0249	4176	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0250	4187	1	1	0	0	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0251	4174	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3A_chr19_921035_980939	0/0	t0252	4156	1	0	0	1	0	0	copy fasta	ARID3A	chr19	921035	980939
ARID3B_chr15_74536220_74603131	0/0	t0001	2545	115	15	14	73	4	9	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	1/0	t0002	2546	105	29	13	51	2	9	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/1	t0003	2546	31	4	14	1	5	6	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0004	2545	25	20	3	0	1	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0005	2565	14	1	0	12	0	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0006	2565	12	0	0	12	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0007	2546	7	0	0	7	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0008	2565	6	0	5	0	1	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0009	2545	4	0	2	0	2	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0010	2545	3	0	0	0	0	3	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0011	2545	2	1	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0012	2565	2	2	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0013	2546	1	0	0	0	1	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0014	2545	1	0	0	0	0	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0015	2545	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0016	2546	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0017	2546	1	0	0	0	0	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0018	2546	1	0	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0019	2546	1	0	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0020	2546	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0021	2545	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0022	2545	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0023	2545	1	0	0	0	0	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	t0024	2565	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3C_chr9_34616049_34634066	1/1	t0001	632	399	91	75	189	12	30	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0002	632	15	0	4	1	4	6	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0003	632	10	3	1	0	0	6	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0004	632	2	2	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0005	632	2	0	0	2	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0006	632	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	t0007	632	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066