JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO1F_chr19_8515778_8582442	1/1	t0002	884	93	11	29	26	10	15	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0003	886	64	20	13	21	4	6	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0004	885	25	0	13	9	0	3	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0005	885	17	16	1	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0006	886	8	1	2	5	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0007	886	3	3	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0008	884	2	0	0	0	0	2	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0009	885	2	0	0	1	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0010	885	2	2	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0011	886	2	2	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0012	884	2	0	0	2	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0013	885	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0014	886	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0015	885	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0016	886	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0017	886	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0018	884	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0019	886	1	1	0	0	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0020	885	1	0	0	1	0	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0021	885	1	0	0	0	1	0	copy fasta	MYO1F	chr19	8515778	8582442
MYO1F_chr19_8515778_8582442	0/0	t0022	884	1	0	0	0	0	1	copy fasta	MYO1F	chr19	8515778	8582442
MYO1G_chr7_44957662_44984015	1/1	t0001	132	372	87	77	146	16	44	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	t0002	132	5	4	1	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1G_chr7_44957662_44984015	0/0	t0003	132	1	1	0	0	0	0	copy fasta	MYO1G	chr7	44957662	44984015
MYO1H_chr12_109342900_109453379	1/0	t0001	1259	158	46	31	56	7	17	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/1	t0002	1259	76	12	14	35	7	7	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0003	1257	35	0	2	24	0	9	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0004	1259	11	1	2	6	0	2	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0005	1259	10	10	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0006	1259	7	6	1	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0007	1257	4	4	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0008	1259	2	0	0	2	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0009	1259	2	2	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0010	1259	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0011	1259	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0012	1259	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0013	1259	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0014	1259	1	0	0	0	0	1	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0015	1259	1	0	0	1	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO1H_chr12_109342900_109453379	0/0	t0016	1259	1	1	0	0	0	0	copy fasta	MYO1H	chr12	109342900	109453379
MYO3A_chr10_25929229_26217532	1/1	t0001	774	128	9	31	61	8	17	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0002	773	107	41	15	46	2	3	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0003	775	7	1	5	1	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0004	773	5	4	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0005	773	5	4	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0006	774	5	1	4	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0007	773	4	3	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0008	773	4	4	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0009	773	3	2	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0010	774	2	1	1	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532